Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00120 ATGGCGTCTTTGTGTAGTGAGGCGAATACTGCTATGACGATGCCTCTGAGAGGCATAATTAGCGAGCAGAGTGAAATAAGAGAAAGCAGTGGGAATTCGTCGAGAAAAGTGAGGGAGGGAGTTCAAGTGCGTCATCTCGGGAAGTCGCATATTGTCCCTGAGCAGCCTTCGTCATCTTCTCCGGTTCCGATCGAACAGAGCCGGTGGGCGAATTTGCCGCCCGAGCTTCTATTGGACATAATTCAACGAGTGGAAGCGAGTGAGACCACTTGGCCTTCTCGCCGGCATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTTGTGAGGACTCCCGAACAGTGTGGGTGGATCACCTTCCCAATTTCCCTGATGCAGCCGGGACCAAGAGAAACGCCAATCCAGTGCTTCATTAAAAGAGAAAGGGCAACTTCAACGTTTCGGCTCTATCTCGGCCTAAGCCCTGCTCTGTCTGGTAATCTAAGTAAACTGCTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACTGATTTCATTGTATCGTTACTTCCAGACGACTTCTCTCGAGCAAGCAACAATTTCATTGGAAAATTGAGGTCAAATTTTCTGGGGACCAAGTTTTCGATTTATGACAGTCAGCCTCCACATGACCCAAAATTGCGAACTAGTAGATCAAAACGAAGAATTCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAAGCTACGAGCTGAATGTCCTCCGCACCAGAGGGCCGAGGAGAATGAGGTGCACAATGCATTCGATACCTGTTGCAGCTGTGGAGGAGGGCGGCACTGCCCCAACTCCAACAGAGTTTAAAGACTGCATCGATGACCATGATTCATCTACGTCGAGTTGCAAAGGAAAGAAGCCGATATGGGAGTCGTCCCCCGAGCCTCTTGAATCGACAGCACCGTTGGTATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTGAATTTCAAAGGGCGTGTCACGGTTGCATCTGTGAAGAATTTCCAGCTGGTTGCTGCAGCAGAGACGAGTGAGAATGTGTCTGCAGCTGAACAAGAAAAAGTGATTCTGCAGTTTGGGAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTACCCTCTCTCAGCTTTCCAAGCGTTTGCAATCTGCCTTAGTAGCTTTGATACCAAGCCAGCTTGTGAATGA 1263 48.46 MASLCSEANTAMTMPLRGIISEQSEIRESSGNSSRKVREGVQVRHLGKSHIVPEQPSSSSPVPIEQSRWANLPPELLLDIIQRVEASETTWPSRRHVVACASVCRSWRMITKEVVRTPEQCGWITFPISLMQPGPRETPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLLPDDFSRASNNFIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVSYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCIDDHDSSTSSCKGKKPIWESSPEPLESTAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSENVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 604113 605949 + Cp4.1LG02g07590.1 Cpe02g00120 464069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00120 420 SUPERFAMILY Tubby C-terminal domain-like 118 420 IPR025659 -
Cpe02g00120 420 SUPERFAMILY F-box domain 65 125 IPR036047 GO:0005515
Cpe02g00120 420 Gene3D Tubby Protein; Chain A 127 420 IPR025659 -
Cpe02g00120 420 PANTHER TUBBY-LIKE F-BOX PROTEIN 14 420 - -
Cpe02g00120 420 PANTHER TUBBY-RELATED 14 420 - -
Cpe02g00120 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Cpe02g00120 420 MobiDBLite consensus disorder prediction 45 65 - -
Cpe02g00120 420 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Cpe02g00120 420 MobiDBLite consensus disorder prediction 297 316 - -
Cpe02g00120 420 Pfam Tub family 130 415 IPR000007 -
Cpe02g00120 420 Pfam F-box domain 69 116 IPR001810 GO:0005515
Cpe02g00120 420 Gene3D - 64 117 - -
Cpe02g00120 420 PRINTS Tubby superfamily signature 201 225 IPR000007 -
Cpe02g00120 420 PRINTS Tubby superfamily signature 249 276 IPR000007 -
Cpe02g00120 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Cpe02g00120 420 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Cpe02g00120 420 PRINTS Tubby superfamily signature 185 201 IPR000007 -
Cpe02g00120 420 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Cpe02g00120 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00120 Cpe06g00104 CCT
Cpe02g00120 Cpe06g00104 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00695 Cpe-Chr1:4029886 Cpe02g00120 Cpe-Chr2:604113 0 dispersed
Cpe02g00120 Cpe-Chr2:604113 Cpe14g00525 Cpe-Chr14:3322335 0 dispersed
Cpe19g00814 Cpe-Chr19:6094376 Cpe02g00120 Cpe-Chr2:604113 3.61E-179 wgd
Cpe02g00120 Cpe-Chr2:604113 Cpe06g00104 Cpe-Chr6:513960 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48974 PF01167 Tub 1.30E-104 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00120 K19600 - csv:101222500 735.717