Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00123 ATGGGAGAGCAAACGCAAGTGCAGGTTCAGACTCAAACGCAATCGCAGGCTCAGAACGCGCTTCATGAATCCTCCAACTCTACAACCTTTATTGCTCAAGCCACTATAGCACTAAGCGAGGTGATGAATGCGCCATCGCAAACCTCTTCTCTGCCATCCAAAATGCCTTTGCGTCCACGGAAGATTCGGAAGCTCTCGCCCGCTGAATCGGATCCGAATTCCTCTCAGATTGTCACCATTCCGGATGGGCCGAAACCTATCGTCACCGGGAAATCTCACAAGAGCAAGACGGCCCAACAACGCGCCGCCTTCGCGTCTGCTCCAGTGCTGCCAGCCCGATCACTTTCCTGTGAAGGCGAGGTGGAAATCGCGCTTCGGCATCTTGGGAATGCGGATCCGCTCCTTGCACCTTTGATCGACCTCCATCAACGTCCTACCTTCGACAGTTTTCAAACCCCATTCCTTGCCCTAACTAGAAGTATCCTATATCAGCAGCTGGCTTACAAAGCTGGCACATCTATTTACACCCGTTTTATCGCCCTTTGTGGCGGCGACGCTGGTGTTCTTCCCGAAACCGTTCTTGCCTTGAACACTCAACAGCTCAGGCAAATTGGAATTTCGGGTCGTAAATCTAGTTATCTTCATGACCTTGCTAGGAAATACCAAAATGGGATTCTTTCAGACACGGCAATTGTAAATATGGATGATAAATCGCTTTTCACGATGCTCACAATGGTGAATGGAATTGGGTCTTGGTCTGTTCATATGTTCATGATTTTCTCGCTGCACAGACCAGATGTGCTTCCTATCAACGATCTTAATGTTCGCAAAGGTACACCACGAAGCTTGAATTTTGATGATTTTAGCTGGAGAAATGCTGCGGTTGGAGCCGATTTCCTTGGCAGTTCTCAAGTGATGGGCCATTTTCTGTCCCATGCCATATGTTAG 948 48.84 MGEQTQVQVQTQTQSQAQNALHESSNSTTFIAQATIALSEVMNAPSQTSSLPSKMPLRPRKIRKLSPAESDPNSSQIVTIPDGPKPIVTGKSHKSKTAQQRAAFASAPVLPARSLSCEGEVEIALRHLGNADPLLAPLIDLHQRPTFDSFQTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGDAGVLPETVLALNTQQLRQIGISGRKSSYLHDLARKYQNGILSDTAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLNVRKGTPRSLNFDDFSWRNAAVGADFLGSSQVMGHFLSHAIC 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 609847 612569 - Cp4.1LG02g07500.1 Cpe02g00123 464072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00123 315 MobiDBLite consensus disorder prediction 1 26 - -
Cpe02g00123 315 MobiDBLite consensus disorder prediction 45 98 - -
Cpe02g00123 315 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 9 288 - -
Cpe02g00123 315 PANTHER BNAC05G15000D PROTEIN 9 288 - -
Cpe02g00123 315 Gene3D - 126 284 - -
Cpe02g00123 315 Gene3D Hypothetical protein; domain 2 151 264 - -
Cpe02g00123 315 Pfam HhH-GPD superfamily base excision DNA repair protein 159 281 IPR003265 GO:0006284
Cpe02g00123 315 CDD ENDO3c 154 281 IPR003265 GO:0006284
Cpe02g00123 315 SMART endo3end 162 303 IPR003265 GO:0006284
Cpe02g00123 315 SUPERFAMILY DNA-glycosylase 149 279 IPR011257 GO:0003824|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00123 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - csv:101202943 476.863
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00123 Cpe06g00109 CCT
Cpe02g00123 Cpe06g00109 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00616 Cpe-Chr10:3578926 Cpe02g00123 Cpe-Chr2:609847 8.04E-70 wgd
Cpe02g00123 Cpe-Chr2:609847 Cpe06g00109 Cpe-Chr6:536354 6.99E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g952 . Blo12g00907 . Bda03g00261 Bpe02g00389 Bpe04g00215 Bma04g00210 Bma01g02322 . . Cma01g01914 Cma09g00154 Car01g01495 . . Cpe06g00109 . . . . . . . . . . . . . . . Cone4ag1913 Cone7ag1826 . . Lsi04g01669 Csa03g04214 Chy04g00505 . . . . . . . . . . Cmo01g01976 Cmo09g00152 . . . Car09g00136 . Cpe02g00123 . . . . . . . Cla05g01936 Cam05g2079 Cec05g2092 Cco05g2143 Clacu05g2075 Cmu05g1950 Cre05g2071 . . . Cme04g00561
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005031 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00123 Cpe_Chr02 FPKM 47.344913 52.484776 5.804558 4.695538 14.026905 15.186508 14.027011 14.852365 14.187095 13.007504