Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00127 ATGGAATTTCAAGCTCACCGGCGGTATCTGCTAGATGTAGTTTTATTATTGTTATTAATTCAGTGTGGTTTAGGTCAGACGGATTCGTTGAACTCCAGTGCGGACTGGACGGCGTTATTTGGTCTCCGATCATCGTTAGGGTTAAGAGGCAAAGATTGGCCTATAAAAGCCGAGCCCTGTTCCTCTTGGACCGGAGTTCAGTGCAAAGCCGGTCGAGTTGTTGGGATCACCGTATCAGGACTGAAGCGAACTCGTAGTAGGCTGATCAGCCCTCGTTTCGCCGTCGATGCGCTTGCGAATTTTACCGCCTTGGTCTCATTCAACGCTTCTGGTTTCTTACTTCCTGGCTCCATTCCGGACTGGTTCGGTCAGTCTCTTGTTACGCTTCAAGTGCTTGATCTAAGCTCTTCTTCGATTGCTGGCCCAATACCCTCCTCCATTGGCAATTTAAGTAAGCTCACTGTTCTTCATTTATCTGGTAATAGTCTTACTGGTAGTATGCCTTCTGCAATCGGACAGTTATCTCAGTTATCTGTTCTTGATCTCTCGAGAAATCTGCTTACTGGGTCAATACCTCCCATTTTTTCATCTCTTAACAATCTTACACGGCTTGAACTTGCCTCGAATTTTTTATCTGGACCGATCCCACCCAATTTAGGCACTCTTAGTAAACTACAAGTGTTGAATCTTTCGGACAACAGTTTAACAGCATCCATACCAAGTGAACTGGGTAATCTATCAGCACTACTGGTGTTTGATCTTAGCATGAATTCGCTAACGGGTGTGCTACCTGTGAATTTGAAGGGGTTAAGGAATTTGGAAAAGATGTATATTGGAGATAACGGCTTAGAGGGCCATTTGCCAGATGATTTGTTTCGAAGTCTTTCTCAGTTACAAGTATTGGCTTTGAGAGGAAATAAACTTGATGGCGGTCTTAATCGTGACTTGCTAGCACACCCCAAATTGAAGTTTCTGGATGTATCTAACAACATCTTGACGGGTAGCTCGCCAAGTTTTGTTCCAAACAGTGTTGCTGTATTCAATTTCTCAAACAATTTTCTGTTTGGTCATCTAAATCTACCCTTCGAATTCCATGGGTCAATCGATTTATCAGGAAACTATTTCCAGGGTGTTGTACAGAACAAGAGTCATAATGTTAGCCTCCGAGGAAACTGCCTGAAAATGGTGCCAAATCAAAGAAATTTTGAGGATTGTAGCCTCTTCTACTCTGGGAAAACCTTAACTTTTGAAGGGTTTGGAGAAGGAAATCCGGACGAACTAGTGCATCGTTATGTTAAAAACAATCGCTTGAAGTTCATAATGGTGGGACTATTTGGTGGATTGGGCCTCGTTGTTATTTTTGTGGTTATCCTCGTATTGTTCTTGAAAATATGTGGCAAAGGTAAAGCAAATAAGAGAGCAAAATCTAATGATGAAGCCAGTCCTTCACTTCCAAAGGAACCGCTCTACTTCGCTGGTCTGGGAGATTCATTTACTTATGAGCAGATGCTACAAAGCACTGGGAATTTCAGCGAAGACAATCTTTTAAAACATGGTCACTCTGGAGATCTCTACAAGGGGTTCCTGGAGAGTGGCCTTCCTGTAGTGATTAAAAAGGTAAATATGCAGTATTTGAAGAATGAAAGGTACTCTCTAGAACTAGACTTTTTCAGCAAAGTATCGCATATGAGATTTGTTCCAGTCTTGGGGCACTGCTTTGAGCGCGAGGATGAAAAGCTCTTGGTGTACAAATGTATGCCAAATGGGGACTTGGCTAATTGCTTGCAGAAGGTTTCCAGTTCAGAAGATGACACCGTGCAAGATATTCTAGCAAGCAGTATCCTCCTTGATGACAAATTCGAAGTGCGTCTTGGAAGCTTGAGTGAGGCCTGTGTTCTAGGAGGGGATCAGCACCATAATGTCTTCTCGAGATTAAGGAGAACACAACAAAGCTCCGAACAAAGCTCTTCTGGGCCCTCACAAGCATCCTGTTCGCTAGACATTTACTGTTTTGGTAAAGTGTTATTAGAACTTGTAACGGGAAAGCTTGGTATCAGCAAAGCAGAAGATTCTACAACAAAGGAGTGGCTGGAATACACCTTATCTAACATAAGTATCCATGATAAGGAACTCATAACAAAGATAGTCGATCCGTCGTTGATGATCGACGACGATCTTCTGGAAGAGGTATGGGCAATGGCGATCATCGCCAAGTTATGTCTGAACCCGAAACCGTCTAGACGACCCCTGATGAGATACATCCTTAAAGCATTGGAAAATCCTTTGAGAGTAATCAGGGAAGAAAGCTCTAGCTCCGGCAGGCTGCGCACAACTTCATCAAGAACATCTTGGAGTGCTGCTTTTCATGGTAGCTGGAGACACAGCTCATCAGATGTACATAGAGAATGTGGCAGTGGTGGCTCAAAACAACCCGGAAGAATAAGCTCATATGGCAGCTGTGGATATGATTTCTTGTCTTCAAATAAAAGGCTATCCAGCGAAATCGTCCCCGAACCAGAAGAATTTCGAGACGTCGAGAGGCAAGACTAG 2550 43.37 MEFQAHRRYLLDVVLLLLLIQCGLGQTDSLNSSADWTALFGLRSSLGLRGKDWPIKAEPCSSWTGVQCKAGRVVGITVSGLKRTRSRLISPRFAVDALANFTALVSFNASGFLLPGSIPDWFGQSLVTLQVLDLSSSSIAGPIPSSIGNLSKLTVLHLSGNSLTGSMPSAIGQLSQLSVLDLSRNLLTGSIPPIFSSLNNLTRLELASNFLSGPIPPNLGTLSKLQVLNLSDNSLTASIPSELGNLSALLVFDLSMNSLTGVLPVNLKGLRNLEKMYIGDNGLEGHLPDDLFRSLSQLQVLALRGNKLDGGLNRDLLAHPKLKFLDVSNNILTGSSPSFVPNSVAVFNFSNNFLFGHLNLPFEFHGSIDLSGNYFQGVVQNKSHNVSLRGNCLKMVPNQRNFEDCSLFYSGKTLTFEGFGEGNPDELVHRYVKNNRLKFIMVGLFGGLGLVVIFVVILVLFLKICGKGKANKRAKSNDEASPSLPKEPLYFAGLGDSFTYEQMLQSTGNFSEDNLLKHGHSGDLYKGFLESGLPVVIKKVNMQYLKNERYSLELDFFSKVSHMRFVPVLGHCFEREDEKLLVYKCMPNGDLANCLQKVSSSEDDTVQDILASSILLDDKFEVRLGSLSEACVLGGDQHHNVFSRLRRTQQSSEQSSSGPSQASCSLDIYCFGKVLLELVTGKLGISKAEDSTTKEWLEYTLSNISIHDKELITKIVDPSLMIDDDLLEEVWAMAIIAKLCLNPKPSRRPLMRYILKALENPLRVIREESSSSGRLRTTSSRTSWSAAFHGSWRHSSSDVHRECGSGGSKQPGRISSYGSCGYDFLSSNKRLSSEIVPEPEEFRDVERQD 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 628788 632653 + Cp4.1LG02g07630.1 Cpe02g00127 464076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00127 849 Pfam Leucine Rich Repeat 321 339 IPR001611 GO:0005515
Cpe02g00127 849 Pfam Protein tyrosine and serine/threonine kinase 514 599 IPR001245 GO:0004672|GO:0006468
Cpe02g00127 849 MobiDBLite consensus disorder prediction 795 815 - -
Cpe02g00127 849 Gene3D Phosphorylase Kinase; domain 1 469 584 - -
Cpe02g00127 849 Gene3D Transferase(Phosphotransferase) domain 1 589 777 - -
Cpe02g00127 849 SUPERFAMILY L domain-like 96 404 - -
Cpe02g00127 849 Gene3D Ribonuclease Inhibitor 291 401 IPR032675 -
Cpe02g00127 849 Gene3D Ribonuclease Inhibitor 35 190 IPR032675 -
Cpe02g00127 849 Gene3D Ribonuclease Inhibitor 191 290 IPR032675 -
Cpe02g00127 849 ProSiteProfiles Leucine-rich repeat profile. 224 247 IPR001611 GO:0005515
Cpe02g00127 849 PANTHER - 9 608 - -
Cpe02g00127 849 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Cpe02g00127 849 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515
Cpe02g00127 849 SUPERFAMILY Protein kinase-like (PK-like) 493 759 IPR011009 -
Cpe02g00127 849 PANTHER RECEPTOR-LIKE PROTEIN 55 9 608 - -
Cpe02g00127 849 PANTHER RECEPTOR-LIKE PROTEIN 55 607 807 - -
Cpe02g00127 849 PANTHER - 607 807 - -
Cpe02g00127 849 PRINTS Leucine-rich repeat signature 222 235 - -
Cpe02g00127 849 PRINTS Leucine-rich repeat signature 177 190 - -
Cpe02g00127 849 SMART LRR_typ_2 222 246 IPR003591 -
Cpe02g00127 849 SMART LRR_typ_2 174 197 IPR003591 -
Cpe02g00127 849 SMART LRR_typ_2 150 173 IPR003591 -
Cpe02g00127 849 SMART LRR_typ_2 270 294 IPR003591 -
Cpe02g00127 849 SMART LRR_typ_2 295 319 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00127 - - - cpep:111788770 1551.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00127 Cpe06g00113 CCT
Cpe02g00127 Cpe06g00113 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00127 Cpe-Chr2:628788 Cpe04g00119 Cpe-Chr4:1093670 0 dispersed
Cpe15g00542 Cpe-Chr15:6275604 Cpe02g00127 Cpe-Chr2:628788 0 wgd
Cpe16g00238 Cpe-Chr16:4460289 Cpe02g00127 Cpe-Chr2:628788 1.99E-159 wgd
Cpe02g00127 Cpe-Chr2:628788 Cpe05g01255 Cpe-Chr5:8783791 2.13E-38 wgd
Cpe02g00127 Cpe-Chr2:628788 Cpe06g00113 Cpe-Chr6:554903 1.59E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g947 Blo01g01562 . Bda01g00529 . Bpe02g00391 Bpe04g00214 . . . . Cma01g01910 Cma09g00158 Car01g01491 . . Cpe06g00113 . . . . . . . . . . . . . . . Cone4ag1911 Cone7ag1825 . . Lsi04g01665 Csa03g04208 Chy04g00510 . . . . . . . . . . Cmo01g01972 Cmo09g00157 . . . Car09g00140 . Cpe02g00127 . . . . . . . Cla05g01941 . . . . . . . . . Cme04g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004382 1 6 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62200 PF07714 PK_Tyr_Ser-Thr 1.90E-06 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00127 Cpe_Chr02 FPKM 2.715437 2.707813 3.362579 3.348709 5.538642 5.055306 4.92769 1.166966 0.878854 0.767794