Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00128 ATGTTCGGACTGGTGGCCTTCGCTGGACTCATGGCTGGGCTCACTTTGGGTCTCATGTCTCTTGGCCTCGTTGACCTCGAAGTTCTTATAAAGTCTGGCCGCCCTCAGGATCGCAAACATGCTGCTAAGATATTGCCAGTGGTAAAGAATCAGCATCTTCTGCTTTGCACACTTTTGATTGGTAACTCTTTGGCAATGGAGGCTCTTCCGATATTCTTAGACATGATCGTACCTCCTTGGCTGGCAGTCCTTGTCTCGGTTACTCTTATTCTCATGTTTGGAGAGATATTACCGCAAGCAATTTGCACTCGTTATGGGTTGAAAGTTGGGGCAATAATGGCACCTTTTGTTCGCGTTCTTCTCATGATTTTCTTTCCCATTTCATATCCAATTAGTAAGGTTCTTGATTGGATGTTGGGTAAAGGGCACGCTGTACTCTTGAGGAGAGCAGAGCTCAAGACTTTTGTGAACTTTCATGGCAATGAGGCTGGAAAAGGTGGAGATTTAACTCACGATGAGACTACTATCATTGCTGGGGCACTTGAATTGACAGAAAAGACAGCCAAAGATGCCATGACATCGATATCAAATGCATTTTCCCTTGATCTGGATGCAACTCTTGATTTGGAGACGCTCAATGCTATTATGACGAAAGGCCATAGTCGAGTTCCTGTTTATTCTGGAGATCCAAAAAACATAATTGGACTAGTTCTGGTTAAAAATCTGTTAACTGTTGATCCAGAAGATAGAGTTCTCCTTAGAAAAATGATTATTAGAAAAATTCCACGGGTTTCTGAAGACATGCCTCTATATGACATTTTAAATGAATTTCAAAAGGGCCATAGTCACATTGCTGTGGTATTCAAGAAACATGGCTACCAATCTGAGGCATTGCTGAAAAAAGACAATGGTGTTGACTCAACTGCTGGTGCTGCTACTCATAATTTAGCGATGAAAATGGAATTAGTTGATGCTCAAACAATAGCTGAAAAGGCCGGGGGCGAACAGACGAAGAAAAGTCCACCAGCTACTCCTGCCTTTAAAAAACGACACAGAGGTTGTTCATTCTGCATTTTAGATGTCGAAAATGCGCCTCTTCCTGTCTTACCACCTGGTGAAGAGGTGGTTGGTGTCATTACTATGGAGGATGTGATTGAAGAACTTCTTCAGGAGGAGATATTAGACGAGACAGACGAGTATGTCAATATCCACAACAGAATAAAAATCAACATGCAACCATCTCCGGAAAAACCAAGCACCAATCCACCTCAGCTTTCCCCAAATGTTAATACGTGA 1296 42.52 MFGLVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRKHAAKILPVVKNQHLLLCTLLIGNSLAMEALPIFLDMIVPPWLAVLVSVTLILMFGEILPQAICTRYGLKVGAIMAPFVRVLLMIFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTSISNAFSLDLDATLDLETLNAIMTKGHSRVPVYSGDPKNIIGLVLVKNLLTVDPEDRVLLRKMIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVFKKHGYQSEALLKKDNGVDSTAGAATHNLAMKMELVDAQTIAEKAGGEQTKKSPPATPAFKKRHRGCSFCILDVENAPLPVLPPGEEVVGVITMEDVIEELLQEEILDETDEYVNIHNRIKINMQPSPEKPSTNPPQLSPNVNT 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 633236 637697 + Cp4.1LG02g07650.1 Cpe02g00128 464077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00128 431 Pfam Cyclin M transmembrane N-terminal domain 2 171 IPR002550 -
Cpe02g00128 431 MobiDBLite consensus disorder prediction 411 431 - -
Cpe02g00128 431 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 2 423 IPR045095 GO:0010960
Cpe02g00128 431 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 423 - -
Cpe02g00128 431 CDD CBS_pair_CorC_HlyC_assoc 187 292 IPR044751 -
Cpe02g00128 431 ProSiteProfiles CBS domain profile. 192 252 IPR000644 -
Cpe02g00128 431 Gene3D - 345 396 IPR046342 -
Cpe02g00128 431 Gene3D - 171 314 IPR046342 -
Cpe02g00128 431 ProSiteProfiles CNNM transmembrane domain profile. 1 173 IPR002550 -
Cpe02g00128 431 SUPERFAMILY CBS-domain pair 176 292 IPR046342 -
Cpe02g00128 431 Pfam CBS domain 201 245 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00128 K16302 CNNM; metal transporter CNNM - csv:101202791 734.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00128 Cpe-Chr2:633236 Cpe04g00341 Cpe-Chr4:4126980 1.86E-161 dispersed
Cpe02g00128 Cpe-Chr2:633236 Cpe15g00413 Cpe-Chr15:5279125 4.31E-164 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g942 . Blo12g00909 Bda01g00530 Bda03g00259 Bpe02g00392 Bpe04g00212 Bma04g00208 Bma01g02320 . . Cma01g01908 . Car01g01490 . . . . . . . . . . . . . . . . . . . . Cone17ag1339 . Lsi04g01664 Csa03g04207 Chy04g00511 . . . . . . . . . . Cmo01g01971 . . . . . . Cpe02g00128 . . . . . . . Cla05g01942 Cam05g2085 Cec05g2098 Cco05g2152 Clacu05g2080 Cmu05g1955 Cre05g2075 . . . Cme04g00566
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009053 2 3 1 2 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00128 Cpe_Chr02 FPKM 7.94353 9.533958 8.016494 10.974846 8.699051 7.651152 11.156108 5.867001 8.596485 9.711248