Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00131 ATGAATTCGATTTGTAGCCAACAGCCTCTCTACGAAGATCGGGCAGGAGAGCTATTTCCTATGATGGGAGTTTATATACAATTTGGAGTATCAATTCAGGCTTCTTGTCAAGTGTGCGGGAATTTCTTGAACACCTCGTTTGAGATATTCTGCATCCACACCATTAATTTGGCTTCAAAGTTTTGCTCAGTCTTTGCACGTCCACTATTACAAAGAGCCGTGTGTGCAGCAAAAACTAAATCGACGGTGAGATTCCACCCTCCTCGAGAACATAAAGAGATCCTAAATGATCTAGGCATTAATGACAACTTGACTAAGGCGATCAAGGAGCTTCCACCTTTTCGAACTCTTTGGAGGGACTGTCGTCGTATTGTGGAATTAGCTGCGACAGGGAGTTGCGACTTTGCGAGGAAGAAGACTGAGAGAGCTTGTTTCCGATCTGGCACAATTAACTTTCGTAAGCATCTTTCTCGAGCTAAATCTGGAATCTACTGGAGATTTTTTGTGGTGATTTCTCCTTCTGCTTTGGAAGTCTTCTGCCGGCAAATTAATCTCGTTTTTGCCAGTGAAGACTTCTGTCCGGATCCTTCTGTAACTATAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGGGAACAGTCAAGAACAGATCACATCGAAGGTCAATGAGCTTAAGGCCAAGTTAGGACCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTGGTGGCTAGGAATTGGAATGTAGACAAAGCAAAGAAAATGTTGGAGGAGACATTCAAATGGAGATCTATGTATAAGCCTGATGAAATTCGTTGGCCTGAAATAGCATTTGAAAGTGAGACCGGAAAACTTTATCGAGCAAGTTTTCATGACCGAGAAGGTAGAACTGTCCTCATAATGAAGCCAGGAAAGCAGAACACAACATCATTAGAGAATCAAATTCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCGGAAGGTCAAGAACAGATGTCATGGTTGATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTGCCAATCAAATCCGCACGAGAGACCGTCAACATCTTGCAGAACCACTATCCCGAGCGACTAGCTCTAGCGTTTCTATATAATCCCCCAAGGATATTTGAAGCCTTCTGGAAGGTAGTCAAATACTTCTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTACCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTCGATGAGGAGAATCTTCCATCAGAGTTTGGAGGAAAAGCTCAACTGGAATATGTCCATGAGGAGTACTCTAGATTAATGATTCAGGATGATGTTAAATGTGCTGCCTTCTGGGAACCTGGTGAAAAGCAACACCACATCGTCAATGGCTACACCAGTGCAGCGGTGGCTCCAGAGTGA 1461 42.85 MNSICSQQPLYEDRAGELFPMMGVYIQFGVSIQASCQVCGNFLNTSFEIFCIHTINLASKFCSVFARPLLQRAVCAAKTKSTVRFHPPREHKEILNDLGINDNLTKAIKELPPFRTLWRDCRRIVELAATGSCDFARKKTERACFRSGTINFRKHLSRAKSGIYWRFFVVISPSALEVFCRQINLVFASEDFCPDPSVTIMFGRWSTSHHEEGNSQEQITSKVNELKAKLGPLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPDEIRWPEIAFESETGKLYRASFHDREGRTVLIMKPGKQNTTSLENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFEAFWKVVKYFLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDVKCAAFWEPGEKQHHIVNGYTSAAVAPE 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 645119 651092 - Cp4.1LG02g07270.1 Cpe02g00131 464080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00131 486 SMART sec14_4 287 442 IPR001251 -
Cpe02g00131 486 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 206 485 - -
Cpe02g00131 486 Pfam CRAL/TRIO domain 291 439 IPR001251 -
Cpe02g00131 486 Gene3D - 204 471 IPR036865 -
Cpe02g00131 486 CDD SEC14 299 440 IPR001251 -
Cpe02g00131 486 SUPERFAMILY CRAL/TRIO domain 281 458 IPR036865 -
Cpe02g00131 486 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 281 445 IPR001251 -
Cpe02g00131 486 SUPERFAMILY CRAL/TRIO N-terminal domain 210 283 IPR036273 -
Cpe02g00131 486 SMART CRAL_TRIO_N_2 242 267 IPR011074 -
Cpe02g00131 486 Pfam CRAL/TRIO, N-terminal domain 221 266 IPR011074 -
Cpe02g00131 486 PANTHER GH16843P 206 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00131 - - - csv:101203752 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00131 Cpe-Chr2:645119 Cpe14g00563 Cpe-Chr14:3577427 3.98E-138 dispersed
Cpe03g01172 Cpe-Chr3:9611147 Cpe02g00131 Cpe-Chr2:645119 2.11E-11 dispersed
Cpe08g00256 Cpe-Chr8:1681290 Cpe02g00131 Cpe-Chr2:645119 1.74E-10 dispersed
Cpe10g00609 Cpe-Chr10:3545984 Cpe02g00131 Cpe-Chr2:645119 2.58E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00131 Cpe_Chr02 FPKM 5.768671 6.818443 5.753944 6.291047 14.071793 12.738714 14.342143 11.629597 9.962129 11.463946