Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00141 ATGGCCGGCCGTAAAGACAAAGCTCAGTCTGCCCGCGTCTCTCGAATCGTCATCGCCATCGCAATCGGAGTTCTTGTTGGCTGTCTTTTTGCTTTCTTGTATCCTCATGGACTTTTCGCCTCTGATCTGCCTGTCCAAAACCGTCGCCTCGCCAAATCCGAGTTTCTGGTTCAGTCTTCTTCTCCTTGCGAATCGTCGGAGCGGTTCAAGATGCTTAAAGGCCACGTCGTTTCAATATTAGAGAAGAACTCCCAGTTGGAGAAGCGTATAAAGGATCTAACAGGGGAACTGAGGATTGTGGAACAAACAAAAGATCATGCTCAGAAGCAATATTTGGCGCTCAGTGAAAATCACAAGGCTGGTCCATTTGGTACTGTCAAAGGTCTTAGAACCAACCCTACCGTAATCCCTGATGAATCTGTAAACCCTCGATTGGCGAAGCTCCTGGAGAAAGTTGCTATCCAGAGGGAGCTGATTGTGACACTCGCGAATTCTAATGTACAACCCATGCTGGAGGTTTGGTTTACGAGTATCCAGAAGGTCGGTATACCGAATTATTTAGTTGTGGCTCTGGATGACCAGACGGAAGAATTCTGCAAATCCCATAATGTTCCTGTCTACACGAGAGATCCAGACAAGAGTGTTGATTTAATCGGAAAGGAAGGAGGCAACCACCAAGTCTCGGCATTGAAGTTTCGGATTTTGAGGGAGTTCTTGCAACTTGGATACAGTGTTCTTCTCTCAGACGTCGATATAGTCTACTTACAGAATCCTTTCGATCATCTTTACCGGGATTCAGATGTGGAGTCGATGAGTGATGGTCACAGCAATATGACAGCTTATGGATACAACGATGTATTTGATGAACCTGCCATGGGCTGGGCTAGATATGCACACACTATGAGAATATGGGTTTACAACTCTGGTTTCTTCTACATTAGGCCTACACTGCCTTCGTTTGAGCTTTTGGATCGTGTCGCGACTCGGCTTTCTCAAGAAAAAGCATGGGACCAAGCTGTTTTTAACGAGGAACTCTTTTATCCTTCTCGTCCTGGACGTGATGGACTTCATGCCTCCAAGAGAACCATGGATATGTATCTTTTCATGAACAGTAAGGTACTCTTCAAGACTGTTCGTAAGGACCCGAAACTCAGACAGTTGAAACCCGTCATTGTTCATATTAATTACCATCCCGACAAGTATCCAAGAATGAAAGCAGTCGTCGAATTCTACGTGAACGGTCAGCAAAATGCTCTGGATTCGTTCCCAGATGTTGAAATTGGAGCGGCTGAAGGAAGTTTAGATGGGGCGTTGTTAAAGGGAAAGAGAATGGAGAAATCGTCGCAGAGGGAGAACATCCTTTTGGGTTATTCGCTTCAGAGATCATTCACGAATCATTCTTCATCGCCGAGATCTCCGAATCGGGACTCCGACGATGTTGATTTTCACGACGTGTTCGGTGGCCCTCCGAGAAGGCGGTCGTCGGCTCATGAAACGCGGTACAGCTTCTCGGAAACGGCGGGTTCCTTCGCATTGAAAGGCGGCGGCGATAACGCACCGCCGGGCCGGAGTAGTTCCTGGTCCTGTTTGAATGAGATACCGGTGTTCGGAGAAGACAGTCCTCACGGGCGAAGATTTTCGAGCAATGATTTTTACGATGATATCTTTAAGGGCGATGAATCCGCGACTCCTCCTCGCCGGCATGAACTTGACATTTTCTCTTCGGTTCCTGGTTCGAGGGTCTCAAGTCCTGCTAGGCAACTTCCGCCGCCGGCAGAGCCATTCGGAAGTTCTTCCCTCCCAGCAGAATTAAGCCTACCATCTAGATTGGCTAAAGGGACTGATCTGCCAGCGTTGGGGTCGAACAATTCGAGCCCCTTAAGAAACAAGGTTGTTGTGTCAAATGGAAGCCATACAAATGCTTCTAGGTTCACTCTGTCTAGATTTTCTTCCAGCACTTCGAGCCATCGTTTCGAGGATCTTAAAAGTGATCACAATTTGTTGGATCGGCCTGGCATTCTGTCATCTGAATTCCAACCTCTTAGCAGCGCCGAGATGCCATCCTTCAGAAAGTCCGATAATGCGTCGAATAGGAACAGTTCAACGAAGGGAGAAGATAGTGTAGAAGATTCAAATGGTGGTGGTCAGTTTCAATTCCATTTCTCAATTTACAAATGGGCAAGCAAAGGGGTGCCTCTAATGATGCCACTGAGAGGAGGGAACGGATCGAGTTTAAGAGAGAAGACTTTGCTTAGGAGAAGCTCAAGCTCGACGAATAGAGTCGTGAAGGAGATGAATGAAAAGCCTGATCGAAGTTTTGAGGAAAAACTTTCATCTGCACCTTCAGCTAACTTGAGCAGACAAAGTTCTCGTAAGGATGTCGACGCTGATAACATCACTCAGCCAGCAAAGCTCGAGAAAGTTTCGAGTGAAAAAGCAGAGAAAAAAATGAGTTCGACGACAAATGAAGATCGAAAGCATGTGGCTAAATCTCTAAGTTCCTTCCTTCTCTACAGTGATGGTGAACAAAGTGAAGATGGGATATCGGAAGAGTTTCGACAAGGAGACATCGCGGCGAAAAGTGACAAGAAATCAGCAAATCTTTCTGAGTTAACTAGTAGCTCAAAGAAACTGGACAAACAAACTTCACTGAGAAATTCAAAAGTGAAAAATCCAAGTTTCCTAAGCTCAGACACGGAATCTCGACAAAACATTGACAGAAAGAAAGCTGGTGGAAGAATCTCGGAGTTCGTCAAGATTTTCAACCACGAACCTGCATCGAAATCCCGAGACGTAGTTGATTTGGGAAATGATAGCTCTACAAGGAAGCAGGAAAGTGCTTCAAAAGCTCAAACACAGGCAACTGTCAATAAAATAAGCAAGGAAGAGAAATCCAAGTTGAATCACAATACAGATGCTTCCATCAAGGTAGATGATGTTTCCAAGCAGTCGGTGCATGTTCACTCTATAGCTGCTAGCTACACTAATAGCTCTACTTCTTCGAAAGAGGGTAGTGCAGCACCCAACACTGTTCATGTTCATAATGTCTCCAAGTCTACAGTTCCAGATGTGGAGGAGCTGTTCCAAGAGAATTTCTCAGTAAAAGAGTTACCACAAGACTATGAGGATTCGAGAGAATCGGATAATGTTCGTGAAGAATTACAAGATATCGATACCAAAATACGACAATGGTCGAAAGGGAAGGAAGGGAATATACGTTCGCTACTGTCAACTTTGCAATATGTTCTTTGGCCTAAGAGCGGATGGAAACCTGTTCCTCTCGTCGATATAATCGAAGGAAATGCAGTCAAAAGATCTTATCAGAAAGCTTTGTTATACCTACACCCTGATAAGCTACAACAGAAGGGTGCTTCAGCAGATCAAAAATATATTGCAGCAAAAGTTTTTGAAATATTGCAGGAGGCTTGGGCTCATTTCAATACACTGGGAGGATTATGA 3459 45.1 MAGRKDKAQSARVSRIVIAIAIGVLVGCLFAFLYPHGLFASDLPVQNRRLAKSEFLVQSSSPCESSERFKMLKGHVVSILEKNSQLEKRIKDLTGELRIVEQTKDHAQKQYLALSENHKAGPFGTVKGLRTNPTVIPDESVNPRLAKLLEKVAIQRELIVTLANSNVQPMLEVWFTSIQKVGIPNYLVVALDDQTEEFCKSHNVPVYTRDPDKSVDLIGKEGGNHQVSALKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHSNMTAYGYNDVFDEPAMGWARYAHTMRIWVYNSGFFYIRPTLPSFELLDRVATRLSQEKAWDQAVFNEELFYPSRPGRDGLHASKRTMDMYLFMNSKVLFKTVRKDPKLRQLKPVIVHINYHPDKYPRMKAVVEFYVNGQQNALDSFPDVEIGAAEGSLDGALLKGKRMEKSSQRENILLGYSLQRSFTNHSSSPRSPNRDSDDVDFHDVFGGPPRRRSSAHETRYSFSETAGSFALKGGGDNAPPGRSSSWSCLNEIPVFGEDSPHGRRFSSNDFYDDIFKGDESATPPRRHELDIFSSVPGSRVSSPARQLPPPAEPFGSSSLPAELSLPSRLAKGTDLPALGSNNSSPLRNKVVVSNGSHTNASRFTLSRFSSSTSSHRFEDLKSDHNLLDRPGILSSEFQPLSSAEMPSFRKSDNASNRNSSTKGEDSVEDSNGGGQFQFHFSIYKWASKGVPLMMPLRGGNGSSLREKTLLRRSSSSTNRVVKEMNEKPDRSFEEKLSSAPSANLSRQSSRKDVDADNITQPAKLEKVSSEKAEKKMSSTTNEDRKHVAKSLSSFLLYSDGEQSEDGISEEFRQGDIAAKSDKKSANLSELTSSSKKLDKQTSLRNSKVKNPSFLSSDTESRQNIDRKKAGGRISEFVKIFNHEPASKSRDVVDLGNDSSTRKQESASKAQTQATVNKISKEEKSKLNHNTDASIKVDDVSKQSVHVHSIAASYTNSSTSSKEGSAAPNTVHVHNVSKSTVPDVEELFQENFSVKELPQDYEDSRESDNVREELQDIDTKIRQWSKGKEGNIRSLLSTLQYVLWPKSGWKPVPLVDIIEGNAVKRSYQKALLYLHPDKLQQKGASADQKYIAAKVFEILQEAWAHFNTLGGL 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 701610 707733 + Cp4.1LG02g07380.1 Cpe02g00141 464090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 739 826 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 472 499 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 928 973 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 679 712 - -
Cpe02g00141 1152 PANTHER ARABINOSYLTRANSFERASE RRA1-RELATED 1006 1145 - -
Cpe02g00141 1152 PANTHER ARABINOSYLTRANSFERASE RRA1-RELATED 1 643 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 959 973 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 574 601 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 939 958 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 463 500 - -
Cpe02g00141 1152 Gene3D DnaJ domain 1048 1151 IPR036869 -
Cpe02g00141 1152 SUPERFAMILY Nucleotide-diphospho-sugar transferases 159 358 IPR029044 -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 865 900 - -
Cpe02g00141 1152 SUPERFAMILY Chaperone J-domain 1043 1146 IPR036869 -
Cpe02g00141 1152 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cpe02g00141 1152 PANTHER ARABINOSYLTRANSFERASE RRA3 1006 1145 IPR044290 GO:0016757|GO:0080147
Cpe02g00141 1152 PANTHER ARABINOSYLTRANSFERASE RRA3 1 643 IPR044290 GO:0016757|GO:0080147
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 807 826 - -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 747 762 - -
Cpe02g00141 1152 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 157 411 IPR029044 -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 846 860 - -
Cpe02g00141 1152 Pfam Nucleotide-diphospho-sugar transferase 183 400 IPR005069 -
Cpe02g00141 1152 MobiDBLite consensus disorder prediction 845 908 - -
Cpe02g00141 1152 Coils Coil 76 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00141 K20783 RRA; arabinosyltransferase [EC:2.4.2.-] - cmax:111480409 1298.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00141 Cpe-Chr2:701610 Cpe06g00121 Cpe-Chr6:601142 1.64E-106 dispersed
Cpe09g00528 Cpe-Chr9:3544839 Cpe02g00141 Cpe-Chr2:701610 8.52E-15 transposed
Cpe15g00524 Cpe-Chr15:6152653 Cpe02g00141 Cpe-Chr2:701610 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00141 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.093835 0.0 0.0