Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00200 ATGGGAGGTTGGGCCATAGCGGTTCACGGCGGGGCTGGTGTGGATCCTAATCTCCCACTGCAACGTCAAGAAGATGCAAAAATGCTTCTCACTCGCTGCCTTGATCTTGGCATTCACGCTCTTCGTTCAAATTCTTCTGCCATTGATGTCGTTGAACTCGTCGTTAGAGAACTTGAAACCGATCCCCTGTTCAACTCAGGGCGTGGATCTGCCCTGACAGAGGAGGGAACCGTTGAAATGGAAGCCAGCATCATGGACGGACCAAAACGGCGATGCGGGGCGGTGTCTGGACTTACCACTGTCAAAAACCCGATCTCCCTCGCCCGTCTTGTCATGGACAAATCCCCTCATTCCTATCTGGCTTTCTCTGGCGCTGAGAAATTCGCTAGAGAACAGGGTGTTGAACTTGAGTGCAATGACTATTTCGTCACCGAAGAAAACGTCGGAATGCTTGAACTAGCCAGAGAAGCCAACAGTATATGGTTAGACTATAGGGTCCCTACAAACGAGAAGTGTAGCGCGAGCGTGGAGACGCCGTTGCAAATGAACGGCCTCCCAATCAGCGTGTACGCGCCAGAGACTGTGGGCTGCGTGGTGGTCGACAGTCAAGGAAGGTGCGCCGCCGCCACTTCAACCGGCGGCCTGATGAACAAAAAGATCGGGCGCATCGGAGACTCTCCGCTGATCGGTTCAGGGACGTACGCGTGCGGGGTGTGCGGGGTATCGTGCACTGGAGAAGGGGAGGCGATCATAAGAGGGACATTGGCAAGAGAAGTAGCGGCGGTGATGGAGTACAAAGGTCTGGGGCTTCAAGAGGCAGTGAATTACGTGATAGAGGAGAGGCTGGACGAAGGGAAGGCCGGACTGATTGCCGTGTCGAGCAATGGTGAAGTTGTATGTGGGTTCAACACCACCGGAATGTTCAGGGGATGTGCGACGGAGGATGGGTTTATGGAGGTTGGGATTTGGAAATAA 975 54.05 MGGWAIAVHGGAGVDPNLPLQRQEDAKMLLTRCLDLGIHALRSNSSAIDVVELVVRELETDPLFNSGRGSALTEEGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFSGAEKFAREQGVELECNDYFVTEENVGMLELAREANSIWLDYRVPTNEKCSASVETPLQMNGLPISVYAPETVGCVVVDSQGRCAAATSTGGLMNKKIGRIGDSPLIGSGTYACGVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLQEAVNYVIEERLDEGKAGLIAVSSNGEVVCGFNTTGMFRGCATEDGFMEVGIWK 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1040216 1041762 + Cp4.1LG02g06660.1 Cpe02g00200 464149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00200 324 Pfam Asparaginase 4 323 IPR000246 GO:0016787
Cpe02g00200 324 CDD Asparaginase_2 5 316 - -
Cpe02g00200 324 PANTHER L-ASPARAGINASE 1 323 IPR000246 GO:0016787
Cpe02g00200 324 Gene3D (Glycosyl)asparaginase 194 324 - -
Cpe02g00200 324 PANTHER PEPTIDASE T2, ASPARAGINASE 2, NUCLEOPHILE AMINOHYDROLASE-RELATED 1 323 - -
Cpe02g00200 324 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 321 IPR029055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00200 K13051 ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] - csv:101218064 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00200 Cpe-Chr2:1040216 Cpe04g00148 Cpe-Chr4:1432113 4.82E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g718 . Blo12g00971 . Bda03g00198 . . Bma04g00151 Bma01g02261 . . Cma01g01812 . Car01g01414 . . . . . . . . . . . . . . . . . . . . Cone17ag0863 Cone20ag0210 Lsi04g01519 Csa04g02446 . . . . . . . . . . Sed01g2692 Cmo01g01868 . . . . . . Cpe02g00200 Bhi09g03275 Tan01g4733 Cmetu07g1766 . Hepe01g1800 Mch11g0330 . Cla05g02077 Cam05g2227 Cec05g2246 Cco05g2288 Clacu05g2221 Cmu05g2088 Cre05g2212 . . Chy07g00161 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009761 1 1 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00200 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.270412 0.0 0.451477 0.022195 0.0 0.0