Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00214 ATGGCTCTTGAAGCTCTGAATTCGCCCACCACTCCATCGCCGGCGCTGCACTACGACGACCCGAGTCTCAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGAACCAAGCGTCCGCGGGGATTCGACAACCCTCCAACCGAGGAGGAGTATTTAGCGTTATGTCTTATCATGCTTGCTCGAGGCGGTGCCACCGCCTCTGACCCTGACCACCGACTTGCTTATGAAGTTCCGATTCCGGCTCAACCCATATCCGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGCGACAAGGCGTTTTCGTCTTACCAGGCTTTGGGTGGACATAAAGCGAGTCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCCACCATAACCACTTCCGCCACCGCTACCACCGCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGCCATAAGTCTTTTCCCACCGGTCAGGCCTTGGGTGGCCACAAGCGTTGCCACTACGACGGCGGAATTGGCAACAACAACAACAACAACCACCACAACCAAACACACAGTCACAACAACAACCACACCGTGACATCGTCCGAAGGAGTTGGGTCGACCCACACGCAGAGCCACAGCCACCGGGACTTCGACCTCAACCTCCCCGCCTTGCCGGAGCTATCTCCGGGATTCTTCATCAATTCCGGCGACGAGGAGGTCCAAAGCCCATTACCCCTGAAGAAGCCTCGAATCTTAACAATTCCCAAAGTCGAAATCACTCAGACATGA 768 54.04 MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATASDPDHRLAYEVPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDHSTSSTITTSATATTAVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGIGNNNNNNHHNQTHSHNNNHTVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFINSGDEEVQSPLPLKKPRILTIPKVEITQT 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1095931 1096698 - Cp4.1LG02g06530.1 Cpe02g00214 464163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00214 255 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Cpe02g00214 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Cpe02g00214 255 SUPERFAMILY beta-beta-alpha zinc fingers 90 165 IPR036236 -
Cpe02g00214 255 MobiDBLite consensus disorder prediction 120 139 - -
Cpe02g00214 255 PANTHER ZINC FINGER PROTEIN ZAT10 1 247 - -
Cpe02g00214 255 MobiDBLite consensus disorder prediction 1 18 - -
Cpe02g00214 255 SMART c2h2final6 90 112 IPR013087 -
Cpe02g00214 255 SMART c2h2final6 143 165 IPR013087 -
Cpe02g00214 255 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 247 IPR044653 GO:0003700
Cpe02g00214 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Cpe02g00214 255 Gene3D Classic Zinc Finger 88 165 - -
Cpe02g00214 255 MobiDBLite consensus disorder prediction 108 140 - -
Cpe02g00214 255 MobiDBLite consensus disorder prediction 170 201 - -
Cpe02g00214 255 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Cpe02g00214 255 MobiDBLite consensus disorder prediction 1 44 - -
Cpe02g00214 255 Pfam C2H2-type zinc finger 143 167 - -
Cpe02g00214 255 Pfam C2H2-type zinc finger 90 114 - -
Cpe02g00214 255 MobiDBLite consensus disorder prediction 170 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00214 Cpe-Chr2:1095931 Cpe05g00395 Cpe-Chr5:2240294 5.98E-19 dispersed
Cpe11g00125 Cpe-Chr11:690222 Cpe02g00214 Cpe-Chr2:1095931 3.47E-49 wgd
Cpe15g00444 Cpe-Chr15:5569416 Cpe02g00214 Cpe-Chr2:1095931 2.75E-31 wgd
Cpe02g00214 Cpe-Chr2:1095931 Cpe04g00323 Cpe-Chr4:3975794 2.65E-45 wgd
Cpe02g00214 Cpe-Chr2:1095931 Cpe06g00194 Cpe-Chr6:1041368 3.18E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48984 PF13912 zf-C2H2_6 1.50E-12 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00214 - - csv:101221218 426.787