Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00230 ATGCCGATGTACCAGCCGTCTTCCGGTCGGAGAAGAGAGGCCGATTCGGAGATGGGTTTGGGTGGTGGTGGTGGTGGTGGGGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGCGGCGGTGGGTTAATCTGCGACGGTGGAGGGGCTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTTTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCCAATATCCTCAAATGGTTTTCTCTTGGCCATTTCACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTTGGCAGAAGTATTTGGCGATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGACACTTTGAAGAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTTCGACAAGTTGTCGCTTCGAATTCTTCGGCGAAGAAAACCGTGGAGGACAATGGCGGTCTTGGTTCGATTTTGTCTTTGTTAGGTCCTTTCACATCCCATGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGAAGAAACCTTGTTCAACCTGCGAAGATTTCATTAATGGTGGATATGTTGAATGAGGGATCCACTGAGACTAAAATCAACTGCACCAGATTGATAGAAACTTTGCTGGATGGTGATGATTGTGGGGCAGACACTGTCTCGAGTTTTAGTCTCTTGGTTGGATTGCTGAGATTAATCAAAGAGAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAGATTGCTAAAAGCTCTGTGCTGCCAAGAACCAGTGATGAACTCAGTAGTGAGCATTGGGGCAATCCCACAATTGATTGAAATTCTCCCGAATTTCGACCCGGAATGTTTGGAGCTAGCTCTTCATGTATTAGACTCGCTTTCGTCCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTGAAGTTGTTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTTGCCCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGCGGTTGCAATCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTAAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1368 47.37 MPMYQPSSGRRREADSEMGLGGGGGGGGQVLDVETAVKDGILGGGGLICDGGGAEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVASNSSAKKTVEDNGGLGSILSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTETKINCTRLIETLLDGDDCGADTVSSFSLLVGLLRLIKEKKHPNGVLAGLRLLKALCCQEPVMNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTIPNLVKLLMRISESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1183807 1185174 + Cp4.1LG02g06490.1 Cpe02g00230 464179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00230 455 Gene3D - 150 278 IPR011989 -
Cpe02g00230 455 CDD RING-Ubox_PUB 75 117 IPR045210 -
Cpe02g00230 455 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Cpe02g00230 455 PANTHER WDSAM1 PROTEIN 44 454 IPR045185 GO:0061630
Cpe02g00230 455 MobiDBLite consensus disorder prediction 1 27 - -
Cpe02g00230 455 Pfam U-box domain 71 141 IPR003613 GO:0004842|GO:0016567
Cpe02g00230 455 Gene3D - 279 449 IPR011989 -
Cpe02g00230 455 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Cpe02g00230 455 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 44 454 - -
Cpe02g00230 455 SUPERFAMILY ARM repeat 160 438 IPR016024 -
Cpe02g00230 455 SUPERFAMILY RING/U-box 65 141 - -
Cpe02g00230 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 149 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00230 Cpe07g00525 CCT
Cpe02g00230 Cpe06g00211 CCT
Cpe02g00230 Cpe11g00111 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00230 Cpe-Chr2:1183807 Cpe19g00539 Cpe-Chr19:4573975 1.12E-38 dispersed
Cpe11g00111 Cpe-Chr11:627309 Cpe02g00230 Cpe-Chr2:1183807 0 wgd
Cpe02g00230 Cpe-Chr2:1183807 Cpe06g00211 Cpe-Chr6:1124965 0 wgd
Cpe02g00230 Cpe-Chr2:1183807 Cpe07g00525 Cpe-Chr7:3466551 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00230 - - csv:101223113 785.023