Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00231 ATGGCTGTCACTTACAATGTGAATGGGTTGGGCCGGAATAGGAAACGAAAACATGCAATGTCATGGTTGGCTCTCTCCATTGCTAACACCCTTCGCCTTGACGACGAAGAAGATGAGCAGCACAACGACGTCGTATCTTCTTCTTCTTCTTCTTCCACCATTCCCCGCAACCAGATGGAATCCCAATCCCAATCCCAATCCCAATCCCAATCCCAACCCCAACTCGACGACGAAGCTTTATCTCGCCGCGTCAAAGAGGACTTGACTGAATTCAAACAAACCCTAACCCGCCAATTTTGGGGCGTGGCCACTTTCCTTGCTCCTCCTCCGCCTCCGCCGGAACCGGGGCCGACTCATCATCTCAACCCGGCGGAGGATCTGGTTGCCCCTCCCGATTGGAAGTCGTTCGAGGCGTCTAATCAGTCTGATCCATCGATCTCCGGGGACGAAGAGGACCTGACTGATCCGATTGAGGTTTTGAATATGCGTTCCAATCATGACGCCTATGCGAAATCGGGGATTTTACAGGAGGAATGCTATGAGGTGGATTGGGAAGGCGCTGTTGGGATCACTGATGAAGTGCTGACGTTTGCGACGAACATTGCAATGCACCCTGAGACTTGGATTGATTTCCCAATTGACGAGGAGGAGGACAACGGTGATTTTGAAATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACATCTTGCTCCTAGATTGGCTGCTCTCAGATTTGAACTCTGTCCTTGCCATATGAGTGAGAGTTACTTTTGGAAAGTCTACTTTGTGCTCCTGCATTCAAGACTCAATAAACAGGATGCTGAGGCTTTATCAACTCCACAGGTAGCAGAAGCCAGATCAATGTGGATGCAGGAATTACAAAAGAAGACCAAGCCAGAGACTTTCTGGTGTGGAAGAGACACTTTTGAATTAAAAGAGAGCTCTGATTTGTTGCAGGAAGATGATAGCTCCATGGGCCTTGAAACTCATTCTGTATCTACGCTGCCTTGGACATTTACATCTGAGCCAAGCATGTCGTCTATGTCGAGCAATTGTGAGACAGAAAAATACCAAATAGAGACTTCTGAAACACAATTCATTGATAAGTCCGTCATCGTTGAAAAACCTATAATTAAAGATGAGGATAAAAACTCGACGATTGAGTCTTCTTCAAAATTCCTTGTTCAGAACTACGATGACGAGTCAGATAATGATTGGCTAGAGGAAGACTCTGGGACCATCCTCCCTCCGGGGTACGACGAAGATATTTCTTTCAGTGATCTCGAGGATGATGATATGGTTCTGCCTGCTAAGTTCAAGATTAATCCTCCAGGTTTGACCCCTCAATCTTCATTGACTTACTACAATAATCCCAAGCAGACTCTCCATCTTGCTATTTGGAAATTTCTCTGTATGGATTTTGAACTTGTTAGAAGGGGCTTGGGATTCTCCCAAAGGAGGAAGAAATGGCTTGTTCTATTGGCTCTCATGGGGGTCTCTGGTTACGGAGTTTATAAGGTCTATCATTTCCCCTCCGTCGAGAGGAAGAGGAAGAGGCTGATGAAGCTCTTCGGTACCATGATTTCCGTCGCTGAAATGGTTGCGGATTCTTCTGAAGCAATCGGAGTAATTTCTAAAGATTTGAAGGAGTTTCTGAAATCTGATTCCGATCAAATTCCCAACAGCTTGAAGCAAATTTCCAAACTCGCTAAATCGGAGGAATTTTCGGAGTCTCTGGAGAAGGTCACCGAGGCATTTACGGTTGGGATGATGAGAGGGTATAAATCTGTAACAAAGAACGACGGAAATTTGGAGGCTGATTCGGTGAATTCGAGCTCTTCTTCTGACGTCGTCGAGAAGCTTTTCTCAACAGCTGGGACTGGTTTTGCTTCTGTTGTGGTTGGAAGTTTTGCAAAGAATTTGGTGATGGGGTATTACTCGATCCCTGGATCAGTCGATGATGCTTACAAATCTGGATCTGAATTTTCAGACGTGCCTAAATGGGTAACTGTGGCCTCCGATGAGAAATGCAAGAATGTTATAGCAGATTGCATACAAGTTTTTGTTAGCACTGCAGTTTCTGTATATCTTGATAAAACAATGGATATTAATGTGTACAATGATCTCTTTAGTGGATTGACCAATCCCACTCATCAGGACAAGGTGAAGGACATGGTTGTTTCTGTTTGTAATGGCGCTGTGGAAACTCTTGTAAAAACATCTCACCAGGTCTTGACAAGCTCGCGATCGTCTTCGAATTTGAGTCCGGTTTCATCCTGTAATGGACTGTCAAAGCTAGGAGACGATGTCTTTTCAGAAGAAGCTTCTTCAAAGAAGATGGCTGCGGGCAGCTCAATTGAGAGTTGCCAAAATGGGTGGATTGACACAGTTTCATCTACTCTGGCAGTTCCTAGAAACAGGAAGTTTGTGCTTGATTTAACTGGTAGAGTGACATTTGAAACGACAAGATCTGTTGTGGATTTTTTGTTATGGAAGCTAATGGATGGTCTCAAGAGAAGTTTTGGTACAGTTCATGATGAAGTTGTGGGTAGGGGTTTGGAAGTCATCTTTGTTCTGAGTAGCTTCTTCTCCATCAGATCAAATTCTATGGAGTCAAGAGTGAGAACTTCTTCATCAACCCATGGCTCTCCAGCATGTGGGAAGCTTGATGGAGTAGCAACTTGGCTCATCAATGGCTTTGTCACAGCTTTCTTTGGATCCTTGGAACGATGCTCTTGTATTCGTATTGCCACAGCTGAGGACGACGGCGATGAGTCGAATGACGCTCCTTTGATCCCAAAAGATGTAATCCATCGACAGGACGGCGATGCAGCTGGCCGGAGGAGGGCCGGGAAAGGCAAGAAGTGTCAGCCACTTGTAGCTGCAATCTAA 2898 45.27 MAVTYNVNGLGRNRKRKHAMSWLALSIANTLRLDDEEDEQHNDVVSSSSSSSTIPRNQMESQSQSQSQSQSQPQLDDEALSRRVKEDLTEFKQTLTRQFWGVATFLAPPPPPPEPGPTHHLNPAEDLVAPPDWKSFEASNQSDPSISGDEEDLTDPIEVLNMRSNHDAYAKSGILQEECYEVDWEGAVGITDEVLTFATNIAMHPETWIDFPIDEEEDNGDFEMSDAQKEHAFTIEHLAPRLAALRFELCPCHMSESYFWKVYFVLLHSRLNKQDAEALSTPQVAEARSMWMQELQKKTKPETFWCGRDTFELKESSDLLQEDDSSMGLETHSVSTLPWTFTSEPSMSSMSSNCETEKYQIETSETQFIDKSVIVEKPIIKDEDKNSTIESSSKFLVQNYDDESDNDWLEEDSGTILPPGYDEDISFSDLEDDDMVLPAKFKINPPGLTPQSSLTYYNNPKQTLHLAIWKFLCMDFELVRRGLGFSQRRKKWLVLLALMGVSGYGVYKVYHFPSVERKRKRLMKLFGTMISVAEMVADSSEAIGVISKDLKEFLKSDSDQIPNSLKQISKLAKSEEFSESLEKVTEAFTVGMMRGYKSVTKNDGNLEADSVNSSSSSDVVEKLFSTAGTGFASVVVGSFAKNLVMGYYSIPGSVDDAYKSGSEFSDVPKWVTVASDEKCKNVIADCIQVFVSTAVSVYLDKTMDINVYNDLFSGLTNPTHQDKVKDMVVSVCNGAVETLVKTSHQVLTSSRSSSNLSPVSSCNGLSKLGDDVFSEEASSKKMAAGSSIESCQNGWIDTVSSTLAVPRNRKFVLDLTGRVTFETTRSVVDFLLWKLMDGLKRSFGTVHDEVVGRGLEVIFVLSSFFSIRSNSMESRVRTSSSTHGSPACGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDESNDAPLIPKDVIHRQDGDAAGRRRAGKGKKCQPLVAAI 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1186402 1195797 + Cp4.1LG02g06500.1 Cpe02g00231 464180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00231 965 PANTHER BSD DOMAIN-CONTAINING PROTEIN 20 443 - -
Cpe02g00231 965 MobiDBLite consensus disorder prediction 105 119 - -
Cpe02g00231 965 ProSiteProfiles BSD domain profile. 226 271 IPR005607 -
Cpe02g00231 965 MobiDBLite consensus disorder prediction 44 77 - -
Cpe02g00231 965 Pfam BSD domain 219 275 IPR005607 -
Cpe02g00231 965 PANTHER BSD DOMAIN-CONTAINING PROTEIN 20 443 - -
Cpe02g00231 965 SUPERFAMILY BSD domain-like 189 276 IPR035925 -
Cpe02g00231 965 MobiDBLite consensus disorder prediction 103 152 - -
Cpe02g00231 965 SMART wurzfinal6 219 271 IPR005607 -
Cpe02g00231 965 Gene3D BSD domain 189 285 IPR035925 -
Cpe02g00231 965 MobiDBLite consensus disorder prediction 38 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00231 - - - bhj:120085673 630.943
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00231 Cpe06g00213 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00231 Cpe-Chr2:1186402 Cpe10g00495 Cpe-Chr10:2901281 9.93E-92 dispersed
Cpe09g00237 Cpe-Chr9:1366887 Cpe02g00231 Cpe-Chr2:1186402 8.36E-07 dispersed
Cpe18g00721 Cpe-Chr18:7085419 Cpe02g00231 Cpe-Chr2:1186402 3.43E-08 dispersed
Cpe05g00591 Cpe-Chr5:3581260 Cpe02g00231 Cpe-Chr2:1186402 6.81E-10 transposed
Cpe06g00213 Cpe-Chr6:1135295 Cpe02g00231 Cpe-Chr2:1186402 0 transposed
Cpe19g00686 Cpe-Chr19:5412924 Cpe02g00231 Cpe-Chr2:1186402 4.71E-67 wgd
Cpe02g00231 Cpe-Chr2:1186402 Cpe06g00212 Cpe-Chr6:1130924 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g620 Blo01g01489 . Bda01g00597 Bda03g00164 Bpe02g00460 Bpe04g00148 Bma04g00137 . . . Cma01g01773 Cma09g00303 Car01g01383 . . Cpe06g00213 . . . . . . . . . . . . . . . Cone4ag1627 Cone7ag1323 . . Lsi04g01465 Csa04g02496 . . . . . . . . . . Sed13g1821 Cmo01g01832 Cmo09g00303 . . . Car09g00255 . Cpe02g00231 Bhi09g03204 Tan01g4673 Cmetu07g0666 . Hepe01g1844 Mch11g0378 . . . . . . . . . . Chy07g00205 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00231 Cpe_Chr02 FPKM 0.0 1.134042 11.058148 13.535443 44.56765 38.346512 46.543606 1.20962 1.410249 0.551925