Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00234 ATGGATAATCTATCTCAGGCCTCAGGCGGACAGTTTCGACCTAATATCCCAGCACAACCAGGCCAGACATTCATTTCCTCATCTGCCCCACAGTTCCAGTCAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAATTCCAGCTGGTCAAGTCCAGCCACATCAGTATCCTCAATCAGTGCCACAGTTTGTGCCAAGGCCAAGCCATCGAGGCTATATCACTCCTTTGTCCCAGGGTATTCAAATGCCTTATGTTCCGACAAGGTCTCGTACTTCTGTTCCACCTCAGAGTCAGCAAAACGTGCCTGCACCAAATAATCAAATGCATGGTCTGGGTTCTCATGGACTACCTATTTCTTCACCATATACTCCAATGTCACAAATGCATGTACCTGTTGGAGTTGGTAATAGCGAACCTTTGATGTCTTCTGTAAGCCAGGCTACAAACTCAGTCTCACAGATTGAGCAAGCTAACCAGCATTCTTCAGTTTCTACCGTAAACCTAGCTGCTAATGTTCCTGTCTTCAATCATCCATCTGATTGGCAAGGGCATGCATCAGCTGATGGAAAAAGGTACTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAAAAGCCATTGGAACTTATGACACCACTTGAGAGAGCTGATGCATCAACTGTGTGGAAGGAATTTACGTCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACAAAAGAATCAAAGTGGACCATGCCAGAAGAACTGAAGTTGGCTCGCGAGCAGGCTCAAAAAGAATCTGTCCAAGGAACACAAACAGATATGGCTGTTACAACGTCTCAACCTACACCTACTGTTGGTCTTTTCCATGCTGAAACGCCGGCAATTTCTACCATTAGCTCCAGCATTTCTCCAACTGTTTCTGGGGTTGCATTGAGTCCAGTTCCAGCTGCTCTTTTTGTTTCTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAATGACTGCTTTTGAAAGCCTTGCATCTCAAGATGTAAAAAATCCTGTTGATGAAACTTCTACGGAGGACATTGAGGAAGCAAGGAAGAGAATGGCAGTTGCAGGAAAAGTTAATGAGACTGTCTTAGAGGAAAAATATGCTGACGATGAACCATTGGTATTCGCCAACAAGCTGGAGGCAAAGAGTGCATTTAAAGCGCTTCTGGAATCTGTAAATGTTCAGTCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATGGCGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCTTTCCATGAGTATTTAGGACATAGAAAAAAGTTGGATGCAGAAGAAAGACGCATAAGACAGAAAAAAGCTCGTGAGGAATTCATCAAGATGTTGGATGAGTCCAAGGAACTCACATCATCTACCAGATGGAGCAAAGCCGTTAGTATGTTTGAGAATGATGAACGGTTCAAAGCCGTTGAACGTTCTAGAGATCGGGAGGATCTTTTTGAAACCTGCATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTACTGAATATAGGGAATTTCTTGAGTCTTGTGATTACATAAAGGACTATATGCGTGAGTTGGAAAAGGAGGAAGAGGAACAGAAGAAGATACAAAAGGGACGTTTGCGAAGAATTGAAAGAAAAAACCGCGATGAGTTCCGCCAACTCATGGAAGAACACATTACCGCTGGTGTTCTTACAGCTAAGACTTTTTGGCGTGATTACTGTTTGAAGGTTAAGGAGTTGCCTCAGTATCAAGCTGTTGCTTCAAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGAAGGAATTAAAAACTAAGTATCACAAAGAAAAGGCTCAGATAAAAGATGTGATGAAGGCAGCGAAGGTTACCATCACTTCATCATGGACATTTGATGACCTTAAGGCTGTCATTGAAGAGGGTGCTCCTCTTGCACTTTCAGATATAAATTTTAAGGATTTACTAGAAAGAGCCAAAGCAAAGGAGCAGAAAGAAGCCAAAAGGCGTCAACGTTTGGCTGATGACTTCTCAAGACTGCTTCAGTTATTCAAGGAGATTTCAGCTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAGAGTGAAGACTACAGATCAATTGGGGAAGAGACCTTCGCGAAGGAAGTTTTTGAGGAATACGTAGTGCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGGGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAATGCGAGGAAAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAAGAAAAGGGACGTGTTAAGAAGGATGAAACTGATAGCGAAAATATAGATGCAAACAAAACTCGTGTCTACAGAGAAAAGAAAAGGGAAAAAAACAAAGACAGGAAACGTCGGAAGCGGCATCATAGTGCCACTGATGATGGTGGTTCTAATAAAGATGAGAGAGAGGAGTCTAAGAAGTCTTGCAAACGTGGCAGTGACCGAAAAAAGTCAAGGAAGGCACGATTTGGTTTCTACGGTTTGCAAGGGCAGAGCGATCAATGTGATTTTAATTGGCCAGGGATGGCAACTGCTGAAAAGAATTCTTTTGAAGAGGAGATGAAGGGTGACCCAGTTATCATTCTTCCATTGTCTGTTAGTGGATACATCTGTAGTGTCCTACAGGAGTTAGTGGCGTATATAAACCAGCCATTTTTATTACTTGTGACCTGGTTTTGTAAGTCGCTACTTCCCTCGTCTACTGTAATTCTGTCGAGAATAATAAATCCACAGGCTGCTTATTTGCGGTTCTCTCAACTGATTTGA 2877 42.65 MDNLSQASGGQFRPNIPAQPGQTFISSSAPQFQSAGQNISSSNVGIPAGQVQPHQYPQSVPQFVPRPSHRGYITPLSQGIQMPYVPTRSRTSVPPQSQQNVPAPNNQMHGLGSHGLPISSPYTPMSQMHVPVGVGNSEPLMSSVSQATNSVSQIEQANQHSSVSTVNLAANVPVFNHPSDWQGHASADGKRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTSPDGRKYYYNKVTKESKWTMPEELKLAREQAQKESVQGTQTDMAVTTSQPTPTVGLFHAETPAISTISSSISPTVSGVALSPVPAALFVSGPPAVVHANASSMTAFESLASQDVKNPVDETSTEDIEEARKRMAVAGKVNETVLEEKYADDEPLVFANKLEAKSAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFIKMLDESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFETCIVELERKEKERAAEEHKKNITEYREFLESCDYIKDYMRELEKEEEEQKKIQKGRLRRIERKNRDEFRQLMEEHITAGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLKELKTKYHKEKAQIKDVMKAAKVTITSSWTFDDLKAVIEEGAPLALSDINFKDLLERAKAKEQKEAKRRQRLADDFSRLLQLFKEISASSNWEDSKQLFEESEDYRSIGEETFAKEVFEEYVVHLQEKAKEKERKGEEEKAKKEKECEEKEKERKEKEREREKEKGRVKKDETDSENIDANKTRVYREKKREKNKDRKRRKRHHSATDDGGSNKDEREESKKSCKRGSDRKKSRKARFGFYGLQGQSDQCDFNWPGMATAEKNSFEEEMKGDPVIILPLSVSGYICSVLQELVAYINQPFLLLVTWFCKSLLPSSTVILSRIINPQAAYLRFSQLI 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1201398 1213335 - Cp4.1LG02g06390.1 Cpe02g00234 464183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00234 958 Gene3D - 218 263 - -
Cpe02g00234 958 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 10 538 IPR039726 GO:0045292
Cpe02g00234 958 MobiDBLite consensus disorder prediction 87 107 - -
Cpe02g00234 958 SMART ww_5 217 249 IPR001202 GO:0005515
Cpe02g00234 958 SMART ww_5 176 208 IPR001202 GO:0005515
Cpe02g00234 958 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 538 858 IPR039726 GO:0045292
Cpe02g00234 958 ProSiteProfiles FF domain profile. 385 439 IPR002713 -
Cpe02g00234 958 CDD WW 222 249 IPR001202 GO:0005515
Cpe02g00234 958 MobiDBLite consensus disorder prediction 751 853 - -
Cpe02g00234 958 MobiDBLite consensus disorder prediction 751 812 - -
Cpe02g00234 958 CDD WW 178 208 IPR001202 GO:0005515
Cpe02g00234 958 MobiDBLite consensus disorder prediction 825 848 - -
Cpe02g00234 958 SUPERFAMILY FF domain 692 753 IPR036517 -
Cpe02g00234 958 ProSiteProfiles FF domain profile. 452 507 IPR002713 -
Cpe02g00234 958 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 10 538 - -
Cpe02g00234 958 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 538 858 - -
Cpe02g00234 958 SUPERFAMILY FF domain 444 514 IPR036517 -
Cpe02g00234 958 ProSiteProfiles WW/rsp5/WWP domain profile. 175 208 IPR001202 GO:0005515
Cpe02g00234 958 SMART FF_2 385 439 IPR002713 -
Cpe02g00234 958 SMART FF_2 563 624 IPR002713 -
Cpe02g00234 958 SMART FF_2 691 746 IPR002713 -
Cpe02g00234 958 SMART FF_2 452 507 IPR002713 -
Cpe02g00234 958 ProSitePatterns WW/rsp5/WWP domain signature. 181 206 IPR001202 GO:0005515
Cpe02g00234 958 SUPERFAMILY FF domain 377 438 IPR036517 -
Cpe02g00234 958 Gene3D FF domain 683 758 IPR036517 -
Cpe02g00234 958 SUPERFAMILY WW domain 209 250 IPR036020 GO:0005515
Cpe02g00234 958 Pfam FF domain 565 620 IPR002713 -
Cpe02g00234 958 Pfam FF domain 454 502 IPR002713 -
Cpe02g00234 958 Pfam FF domain 387 436 IPR002713 -
Cpe02g00234 958 Coils Coil 615 642 - -
Cpe02g00234 958 Coils Coil 537 565 - -
Cpe02g00234 958 Coils Coil 677 697 - -
Cpe02g00234 958 Gene3D FF domain 542 635 IPR036517 -
Cpe02g00234 958 Gene3D FF domain 441 517 IPR036517 -
Cpe02g00234 958 MobiDBLite consensus disorder prediction 1 55 - -
Cpe02g00234 958 SUPERFAMILY FF domain 558 630 IPR036517 -
Cpe02g00234 958 Coils Coil 510 530 - -
Cpe02g00234 958 Coils Coil 737 796 - -
Cpe02g00234 958 MobiDBLite consensus disorder prediction 87 124 - -
Cpe02g00234 958 Pfam WW domain 222 247 IPR001202 GO:0005515
Cpe02g00234 958 Pfam WW domain 178 206 IPR001202 GO:0005515
Cpe02g00234 958 ProSiteProfiles WW/rsp5/WWP domain profile. 216 249 IPR001202 GO:0005515
Cpe02g00234 958 ProSiteProfiles FF domain profile. 561 624 IPR002713 -
Cpe02g00234 958 SUPERFAMILY WW domain 180 214 IPR036020 GO:0005515
Cpe02g00234 958 Gene3D - 156 217 - -
Cpe02g00234 958 Gene3D FF domain 385 440 IPR036517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00234 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1263.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00234 Cpe06g00216 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00234 Cpe-Chr2:1201398 Cpe12g00529 Cpe-Chr12:5441485 6.95E-26 dispersed
Cpe01g00390 Cpe-Chr1:2249359 Cpe02g00234 Cpe-Chr2:1201398 0 wgd
Cpe02g00234 Cpe-Chr2:1201398 Cpe06g00216 Cpe-Chr6:1147651 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00234 Cpe_Chr02 FPKM 29.699053 33.93412 91.131119 83.945381 59.333534 71.621239 52.663559 18.149818 17.470827 15.631123