Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00237 TTTGACTGGTATAATCTCATCTGTTTTGAGGCAATGGTTAGGTGTATGGTTTACGGCAAAGAAACTGTGGAGCTAGCTAGAGATCAAAGAATGAGTAATGGTACTAGGATGGAAGATCAATTTAGGGGCAGAAAGATTTTTGTTGGAGGATTATCGGCTGAATTGACTGAAGATGACTTCAAAAATTACTTTGAAAAGTTTGGTCGGGTAACTGACGTAGTCGTGATGCGTGATAGTGTAACTAAACGCCCTAGAGGATTTGGATTTATCACGTTTGATTCTGTACAATCCGTTGACTCTGTTCTTCAAAATAACTTTCATGAGTTAAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCAAAAAAGGGGAACTACAATGGCGGCCATATTTCCAAAAGCCCTCTTTCTGAAAGCAATGTTCTTCCCTCTTACCCATATTATAGCTGTGGTTATACAGTTTATCCTGGTTTTACACCTTTTCCACCTTATGGACCAGGTTTTGGTTTATATGGCTCAGACCCCTATGGGAATTGGTTTTCCCCCAGCTTTGGTCCCATGGCTTCACCAGCTGCATGGTATGCTCCAAATTTCTTTGGAATGTTTCCTCCACCTCATAAAAATTCTCTAGTTTATCCAACGTATTCAAGCAATGGGCTATCTACTCCGGTGGCTGGATATGAAACTGCTGATGGGAGAAGAAAGGTTGAGCCCCCCTCTCGTGCACAGAAAAATATGTCGGCTGACGCAGTGCCATTTCATGCTAAGGATAAAGCTTGA 780 42.31 FDWYNLICFEAMVRCMVYGKETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETADGRRKVEPPSRAQKNMSADAVPFHAKDKA 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1218494 1219766 + Cp4.1LG02g06460.1 Cpe02g00237 464186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00237 259 MobiDBLite consensus disorder prediction 230 259 - -
Cpe02g00237 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Cpe02g00237 259 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 32 218 - -
Cpe02g00237 259 SUPERFAMILY RNA-binding domain, RBD 42 130 IPR035979 GO:0003676
Cpe02g00237 259 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 32 218 - -
Cpe02g00237 259 SMART rrm1_1 45 117 IPR000504 GO:0003723
Cpe02g00237 259 Gene3D - 23 135 IPR012677 -
Cpe02g00237 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00237 K14411 MSI; RNA-binding protein Musashi - csv:101211898 234.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00237 Cpe-Chr2:1218494 Cpe20g00660 Cpe-Chr20:4190010 4.10E-16 dispersed
Cpe02g00237 Cpe-Chr2:1218494 Cpe15g00097 Cpe-Chr15:733912 7.97E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010408 1 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 2 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00237 Cpe_Chr02 FPKM 286.716064 313.571869 129.145859 144.419373 147.198334 157.97052 145.208374 161.03241 183.269531 169.224518