Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00238 | ATGGAGTCACTCAGCACATTACAACCTCAAGAAATGTTGCCAAATATCTCACCAAAGCTTGAGGACTTTCTTGGTAGTGCTAATCATGGAAGAGAGGCCACAGCTTTGAGCTTAGACAGCATATATTACAATCAAAATGATGGTGCTGATGCTGTCTCAGAGAGGCAACATTGTTTGAATCTTTTTAAGCAACAAGAGCAACATATTCTTTTTGGAATGTTCCAGTTTCCAGCTGAGGATGCCAACAAGGAGTCTCATATTGCAAGCCATAGCTATGAAATTCGACACGCTCTGGAGCAGCGTATCGATCGGATGAGTAGCCAAGACGTAGAGCCTCTTAGCTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTGCTCCAACCCAAAATTGTCATCCTGGACTAGCCACCATGGAAACAAAGAAAAGGGGTCTACTTGGTCGAAAGAAGCCGGTGCACCGGAAGTCGATCGACACGTTCGGACAAAGAACGTCACAGTACAGAGGTGTTTCGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTTTCAAGTACTGGGGACCCTCCACGCATTTGAACTTCCCGTTAAAGAATTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTCGCCCATCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCGATATACAGAGGAGTAACTAGGTGCACACAAGAGGAAGCAGCTGAAGCATATGACATAGCAGCCATCAAGTTCCGTGGCACAAACGCGGTTACAAACTTCGACACTTCAAGATACAACGTAGAAAGGATCATGGTGAGCAGCAGCCTTCTTTCAAGAGAGATAGCAAGACGAAACAAAGAGCACAAACTAACCAACGCAATCGAGCGCAAAGAACCGACACAAAACATCGATCGAATCGACCCCTCGGAGATTTCCAACAGCAACAACATAGATTTGAGGTCGACATTCGACGACACGATGTTGCTGGATCGAAACACAACCATTGAATCCATAGACCGGAAGTCGGTAACATCCGGTGGTTACCTAAACCATCTGATGGGAGTGGAAACGGCAATGGGGAAGGATTCAAGGAAGTTCAGGGCACATTTCTCCAATGCTTCAGTTTCTTTGCCTGTTATGTCAAGTGTTTGGAATGATGTCTGA | 1281 | 45.04 | MESLSTLQPQEMLPNISPKLEDFLGSANHGREATALSLDSIYYNQNDGADAVSERQHCLNLFKQQEQHILFGMFQFPAEDANKESHIASHSYEIRHALEQRIDRMSSQDVEPLSLSMSPGSQSSCVTAPTQNCHPGLATMETKKRGLLGRKKPVHRKSIDTFGQRTSQYRGVSRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAAFKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRCTQEEAAEAYDIAAIKFRGTNAVTNFDTSRYNVERIMVSSSLLSREIARRNKEHKLTNAIERKEPTQNIDRIDPSEISNSNNIDLRSTFDDTMLLDRNTTIESIDRKSVTSGGYLNHLMGVETAMGKDSRKFRAHFSNASVSLPVMSSVWNDV | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1220356 | 1224425 | + | Cp4.1LG02g06420.1 | Cpe02g00238 | 464187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00238 | 426 | ProSiteProfiles | AP2/ERF domain profile. | 168 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | SUPERFAMILY | DNA-binding domain | 167 | 232 | IPR016177 | GO:0003677 | |
Cpe02g00238 | 426 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 1 | 72 | - | - | |
Cpe02g00238 | 426 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 99 | 273 | - | - | |
Cpe02g00238 | 426 | CDD | AP2 | 250 | 302 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | CDD | AP2 | 167 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | SMART | rav1_2 | 168 | 237 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | SMART | rav1_2 | 245 | 306 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 72 | - | - | |
Cpe02g00238 | 426 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 99 | 273 | - | - | |
Cpe02g00238 | 426 | MobiDBLite | consensus disorder prediction | 111 | 130 | - | - | |
Cpe02g00238 | 426 | Gene3D | AP2/ERF domain | 242 | 302 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | Gene3D | AP2/ERF domain | 167 | 233 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 275 | 422 | - | - | |
Cpe02g00238 | 426 | Pfam | AP2 domain | 168 | 223 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | SUPERFAMILY | DNA-binding domain | 274 | 302 | IPR016177 | GO:0003677 | |
Cpe02g00238 | 426 | ProSiteProfiles | AP2/ERF domain profile. | 220 | 300 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 275 | 422 | - | - | |
Cpe02g00238 | 426 | PRINTS | Ethylene responsive element binding protein signature | 169 | 180 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00238 | 426 | PRINTS | Ethylene responsive element binding protein signature | 282 | 302 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00238 | Cpe06g00218 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00238 | Cpe-Chr2:1220356 | Cpe10g00499 | Cpe-Chr10:2922938 | 1.33E-112 | dispersed | |
Cpe11g00106 | Cpe-Chr11:586597 | Cpe02g00238 | Cpe-Chr2:1220356 | 3.30E-126 | wgd | |
Cpe19g00692 | Cpe-Chr19:5444619 | Cpe02g00238 | Cpe-Chr2:1220356 | 2.85E-115 | wgd | |
Cpe02g00238 | Cpe-Chr2:1220356 | Cpe06g00218 | Cpe-Chr6:1159931 | 1.12E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48987 | PF00847 | AP2 | 4.50E-10 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00238 | K09285 | - | csv:101212143 | 563.533 |