Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00238 ATGGAGTCACTCAGCACATTACAACCTCAAGAAATGTTGCCAAATATCTCACCAAAGCTTGAGGACTTTCTTGGTAGTGCTAATCATGGAAGAGAGGCCACAGCTTTGAGCTTAGACAGCATATATTACAATCAAAATGATGGTGCTGATGCTGTCTCAGAGAGGCAACATTGTTTGAATCTTTTTAAGCAACAAGAGCAACATATTCTTTTTGGAATGTTCCAGTTTCCAGCTGAGGATGCCAACAAGGAGTCTCATATTGCAAGCCATAGCTATGAAATTCGACACGCTCTGGAGCAGCGTATCGATCGGATGAGTAGCCAAGACGTAGAGCCTCTTAGCTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTGCTCCAACCCAAAATTGTCATCCTGGACTAGCCACCATGGAAACAAAGAAAAGGGGTCTACTTGGTCGAAAGAAGCCGGTGCACCGGAAGTCGATCGACACGTTCGGACAAAGAACGTCACAGTACAGAGGTGTTTCGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTTTCAAGTACTGGGGACCCTCCACGCATTTGAACTTCCCGTTAAAGAATTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTCGCCCATCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCGATATACAGAGGAGTAACTAGGTGCACACAAGAGGAAGCAGCTGAAGCATATGACATAGCAGCCATCAAGTTCCGTGGCACAAACGCGGTTACAAACTTCGACACTTCAAGATACAACGTAGAAAGGATCATGGTGAGCAGCAGCCTTCTTTCAAGAGAGATAGCAAGACGAAACAAAGAGCACAAACTAACCAACGCAATCGAGCGCAAAGAACCGACACAAAACATCGATCGAATCGACCCCTCGGAGATTTCCAACAGCAACAACATAGATTTGAGGTCGACATTCGACGACACGATGTTGCTGGATCGAAACACAACCATTGAATCCATAGACCGGAAGTCGGTAACATCCGGTGGTTACCTAAACCATCTGATGGGAGTGGAAACGGCAATGGGGAAGGATTCAAGGAAGTTCAGGGCACATTTCTCCAATGCTTCAGTTTCTTTGCCTGTTATGTCAAGTGTTTGGAATGATGTCTGA 1281 45.04 MESLSTLQPQEMLPNISPKLEDFLGSANHGREATALSLDSIYYNQNDGADAVSERQHCLNLFKQQEQHILFGMFQFPAEDANKESHIASHSYEIRHALEQRIDRMSSQDVEPLSLSMSPGSQSSCVTAPTQNCHPGLATMETKKRGLLGRKKPVHRKSIDTFGQRTSQYRGVSRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAAFKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRCTQEEAAEAYDIAAIKFRGTNAVTNFDTSRYNVERIMVSSSLLSREIARRNKEHKLTNAIERKEPTQNIDRIDPSEISNSNNIDLRSTFDDTMLLDRNTTIESIDRKSVTSGGYLNHLMGVETAMGKDSRKFRAHFSNASVSLPVMSSVWNDV 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1220356 1224425 + Cp4.1LG02g06420.1 Cpe02g00238 464187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00238 426 ProSiteProfiles AP2/ERF domain profile. 168 231 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 SUPERFAMILY DNA-binding domain 167 232 IPR016177 GO:0003677
Cpe02g00238 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 1 72 - -
Cpe02g00238 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 99 273 - -
Cpe02g00238 426 CDD AP2 250 302 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 CDD AP2 167 231 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 SMART rav1_2 168 237 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 SMART rav1_2 245 306 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 72 - -
Cpe02g00238 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 99 273 - -
Cpe02g00238 426 MobiDBLite consensus disorder prediction 111 130 - -
Cpe02g00238 426 Gene3D AP2/ERF domain 242 302 IPR036955 GO:0003700|GO:0006355
Cpe02g00238 426 Gene3D AP2/ERF domain 167 233 IPR036955 GO:0003700|GO:0006355
Cpe02g00238 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 275 422 - -
Cpe02g00238 426 Pfam AP2 domain 168 223 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 SUPERFAMILY DNA-binding domain 274 302 IPR016177 GO:0003677
Cpe02g00238 426 ProSiteProfiles AP2/ERF domain profile. 220 300 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 275 422 - -
Cpe02g00238 426 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Cpe02g00238 426 PRINTS Ethylene responsive element binding protein signature 282 302 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00238 Cpe06g00218 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00238 Cpe-Chr2:1220356 Cpe10g00499 Cpe-Chr10:2922938 1.33E-112 dispersed
Cpe11g00106 Cpe-Chr11:586597 Cpe02g00238 Cpe-Chr2:1220356 3.30E-126 wgd
Cpe19g00692 Cpe-Chr19:5444619 Cpe02g00238 Cpe-Chr2:1220356 2.85E-115 wgd
Cpe02g00238 Cpe-Chr2:1220356 Cpe06g00218 Cpe-Chr6:1159931 1.12E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48987 PF00847 AP2 4.50E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00238 K09285 - csv:101212143 563.533