Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00244 ATGGAGGATTATAATAATCATCTAAACGAGAACTCAAATCCGAGAGGCAATTTCTTGTACGCATCAGCAAATTCTTCATCGGGTAATTATGGCAGATCAAGCAATCCGACGGCTCAGATGGCTGCTCACACGTTTCATCTTCAACAAGGAGCTGATTGTTTTCAACCCGAGCAATCGCACCCGATTGTCAAGTCGGAAGCTAGTAGTTCCCACCACCAGCTCCTCAAATTCCACTACTCTTTAGGACAGCCGCCGCCGCCGACGACGACAACATGTCGGCCTGATGATGACGGCGGCGTTGATGTTGAAGCCATTAAAGCCAAAATCATGGCTCATCCACAATATTCCAGCCTCCTTGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCAGCTGGTGGCTGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCTGGAGATTCCACGAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATACCGAGAGGAACTTACAAGGCCAGTTCAAGAAGCCATGGATTTCATGCGCAGGATCGAATCTCAGCTCAGTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGAGGAGGAACAAGAGAATAGCGGGGGAGAAACCGAGCTACCGGAGATCGACCCGCGAGCGGAAGACAGGGAATTGAAGAACCACCTACTGAGGAAGTATAGTGGTTTCCTGAGCAGTTTAAAGCAAGAACTGTCTAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGATGCAAGGCAGAAGCTTCTTAATTGGTGGGAGTTGCATTACAAATGGCCATATCCTTCAGAGACAGAGAAGGTAGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTTCCAATGCAGCGCTCTACCTCGACGGTCATTACATGACCGATGGCCATTATCGACTCGGACCGTGA 1068 48.03 MEDYNNHLNENSNPRGNFLYASANSSSGNYGRSSNPTAQMAAHTFHLQQGADCFQPEQSHPIVKSEASSSHHQLLKFHYSLGQPPPPTTTTCRPDDDGGVDVEAIKAKIMAHPQYSSLLEAYMECQKVGAPPQVVEQLVAARQEFEARQRSSMVSGDSTKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIESQLSSLCNGPVRIFNSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGFLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPSNAALYLDGHYMTDGHYRLGP 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1263078 1265941 - Cp4.1LG02g06180.1 Cpe02g00244 464193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00244 355 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677|GO:0006355
Cpe02g00244 355 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677
Cpe02g00244 355 MobiDBLite consensus disorder prediction 1 20 - -
Cpe02g00244 355 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 347 - -
Cpe02g00244 355 Gene3D - 262 324 - -
Cpe02g00244 355 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 347 - -
Cpe02g00244 355 ProSitePatterns 'Homeobox' domain signature. 295 318 IPR017970 GO:0000981|GO:0006355
Cpe02g00244 355 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Cpe02g00244 355 SMART ELK_2 237 258 IPR005539 GO:0003677
Cpe02g00244 355 Pfam KNOX1 domain 104 146 IPR005540 GO:0003677|GO:0005634
Cpe02g00244 355 Pfam KNOX2 domain 159 204 IPR005541 GO:0003677|GO:0005634
Cpe02g00244 355 Pfam ELK domain 237 258 IPR005539 GO:0003677
Cpe02g00244 355 SMART HOX_1 259 324 IPR001356 GO:0003677
Cpe02g00244 355 CDD homeodomain 269 321 IPR001356 GO:0003677
Cpe02g00244 355 SUPERFAMILY Homeodomain-like 258 333 IPR009057 -
Cpe02g00244 355 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677
Cpe02g00244 355 SMART KNOX2_2 154 205 IPR005541 GO:0003677|GO:0005634
Cpe02g00244 355 MobiDBLite consensus disorder prediction 213 232 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00244 Cpe07g00541 CCT
Cpe02g00244 Cpe06g00228 CCT
Cpe02g00244 Cpe11g00100 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00244 Cpe-Chr2:1263078 Cpe19g00947 Cpe-Chr19:6757566 5.06E-86 dispersed
Cpe04g00712 Cpe-Chr4:7053610 Cpe02g00244 Cpe-Chr2:1263078 3.10E-43 transposed
Cpe11g00100 Cpe-Chr11:547226 Cpe02g00244 Cpe-Chr2:1263078 9.24E-123 wgd
Cpe02g00244 Cpe-Chr2:1263078 Cpe06g00228 Cpe-Chr6:1210210 0 wgd
Cpe02g00244 Cpe-Chr2:1263078 Cpe07g00541 Cpe-Chr7:3587464 4.23E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48989 PF03791 KNOX2 1.50E-25 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00244 - - csv:101213104 569.696