Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00244 | ATGGAGGATTATAATAATCATCTAAACGAGAACTCAAATCCGAGAGGCAATTTCTTGTACGCATCAGCAAATTCTTCATCGGGTAATTATGGCAGATCAAGCAATCCGACGGCTCAGATGGCTGCTCACACGTTTCATCTTCAACAAGGAGCTGATTGTTTTCAACCCGAGCAATCGCACCCGATTGTCAAGTCGGAAGCTAGTAGTTCCCACCACCAGCTCCTCAAATTCCACTACTCTTTAGGACAGCCGCCGCCGCCGACGACGACAACATGTCGGCCTGATGATGACGGCGGCGTTGATGTTGAAGCCATTAAAGCCAAAATCATGGCTCATCCACAATATTCCAGCCTCCTTGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCAGCTGGTGGCTGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCTGGAGATTCCACGAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATACCGAGAGGAACTTACAAGGCCAGTTCAAGAAGCCATGGATTTCATGCGCAGGATCGAATCTCAGCTCAGTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGAGGAGGAACAAGAGAATAGCGGGGGAGAAACCGAGCTACCGGAGATCGACCCGCGAGCGGAAGACAGGGAATTGAAGAACCACCTACTGAGGAAGTATAGTGGTTTCCTGAGCAGTTTAAAGCAAGAACTGTCTAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGATGCAAGGCAGAAGCTTCTTAATTGGTGGGAGTTGCATTACAAATGGCCATATCCTTCAGAGACAGAGAAGGTAGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTTCCAATGCAGCGCTCTACCTCGACGGTCATTACATGACCGATGGCCATTATCGACTCGGACCGTGA | 1068 | 48.03 | MEDYNNHLNENSNPRGNFLYASANSSSGNYGRSSNPTAQMAAHTFHLQQGADCFQPEQSHPIVKSEASSSHHQLLKFHYSLGQPPPPTTTTCRPDDDGGVDVEAIKAKIMAHPQYSSLLEAYMECQKVGAPPQVVEQLVAARQEFEARQRSSMVSGDSTKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIESQLSSLCNGPVRIFNSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGFLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPSNAALYLDGHYMTDGHYRLGP | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1263078 | 1265941 | - | Cp4.1LG02g06180.1 | Cpe02g00244 | 464193 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00244 | 355 | Pfam | Homeobox KN domain | 277 | 316 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe02g00244 | 355 | ProSiteProfiles | 'Homeobox' domain profile. | 257 | 320 | IPR001356 | GO:0003677 | |
Cpe02g00244 | 355 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cpe02g00244 | 355 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 347 | - | - | |
Cpe02g00244 | 355 | Gene3D | - | 262 | 324 | - | - | |
Cpe02g00244 | 355 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 347 | - | - | |
Cpe02g00244 | 355 | ProSitePatterns | 'Homeobox' domain signature. | 295 | 318 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe02g00244 | 355 | SMART | KNOX1_2 | 103 | 147 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe02g00244 | 355 | SMART | ELK_2 | 237 | 258 | IPR005539 | GO:0003677 | |
Cpe02g00244 | 355 | Pfam | KNOX1 domain | 104 | 146 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe02g00244 | 355 | Pfam | KNOX2 domain | 159 | 204 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe02g00244 | 355 | Pfam | ELK domain | 237 | 258 | IPR005539 | GO:0003677 | |
Cpe02g00244 | 355 | SMART | HOX_1 | 259 | 324 | IPR001356 | GO:0003677 | |
Cpe02g00244 | 355 | CDD | homeodomain | 269 | 321 | IPR001356 | GO:0003677 | |
Cpe02g00244 | 355 | SUPERFAMILY | Homeodomain-like | 258 | 333 | IPR009057 | - | |
Cpe02g00244 | 355 | ProSiteProfiles | ELK domain profile. | 237 | 257 | IPR005539 | GO:0003677 | |
Cpe02g00244 | 355 | SMART | KNOX2_2 | 154 | 205 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe02g00244 | 355 | MobiDBLite | consensus disorder prediction | 213 | 232 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00244 | Cpe07g00541 | CCT | |
Cpe02g00244 | Cpe06g00228 | CCT | |
Cpe02g00244 | Cpe11g00100 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00244 | Cpe-Chr2:1263078 | Cpe19g00947 | Cpe-Chr19:6757566 | 5.06E-86 | dispersed | |
Cpe04g00712 | Cpe-Chr4:7053610 | Cpe02g00244 | Cpe-Chr2:1263078 | 3.10E-43 | transposed | |
Cpe11g00100 | Cpe-Chr11:547226 | Cpe02g00244 | Cpe-Chr2:1263078 | 9.24E-123 | wgd | |
Cpe02g00244 | Cpe-Chr2:1263078 | Cpe06g00228 | Cpe-Chr6:1210210 | 0 | wgd | |
Cpe02g00244 | Cpe-Chr2:1263078 | Cpe07g00541 | Cpe-Chr7:3587464 | 4.23E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48989 | PF03791 | KNOX2 | 1.50E-25 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00244 | - | - | csv:101213104 | 569.696 |