Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00259 GGTGAAAAAAGCATTGATGGATCAAGAACAGATATTGATCATCAAGAACAGCAACTAGATGAGTATCAAATCAAAAAAGGAGATAATGGGTCAGCTGCAAAATACTGGATGTCTTCAAAGATGAGATTGATGCAAAAGATGATGAAAGTTGGCGGTGGAAATTCAGATCAGGCGGCGGCGGCGGCGGTGGCGGCGGCTGGTAGAAGAAGCAATAATAATGAAGGAAGATCATGTTGTAGTTCAAATGGTGTTAGGGTTTGCAGTGATTGTAACACCACGACAACTCCTCTATGGCGCAGTGGTCCTCAAGGCCCTAAGGTCATTCCCCTTCTCTATCTGACAAATTACTTTAATTTTACTGGTGAAAAAAGCATTGATGGATCAAGAACAGATATTGATCATCAAGAACAGCAACTAGATGAGTATCAAATCAAAAAAGGAGATAATGGGTCAGCTGCAAAATACTGGATGTCTTCAAAGATGAGATTGATGCAAAAGATGATGAAAGTTGGCGGTGGAAATTCAGATCAGGCGGCGGCGGCGGCGGTGGCGGCGGCTGGTAGAAGAAGCAATAATAATGAAGGAAGATCATGTTGTAGTTCAAATGGTGTTAGGGTTTGCAGTGATTGTAACACCACGACAACTCCTCTATGGCGCAGTGGTCCTCAAGGCCCTAAGGTCATTCCCCTTCTCTATCTGACAAATTACTTTAATTTTACTTCGCTATGCAATGCATGTGGGATCCGGCAGAGGAAGGCAAGGCGAGCAATGGCGGAAGCTGCAAATGGCGGTGGGGGCGGGGCAGTCGTGGCGGCGGCGTCCGGGAAGGAGTTGCACAAGGAGAAGAAATCACGTTTGAGTTGGCATGGAGATGATGATGATGATGAGGAAGTGAAGAAGAAGAAGGGCAATAATAGGAATATGGGAGAGAAGTGTTTGGAGTCTCAAAGTGAAGGGAGGAACGACGGCGTTTTACGTTTGAGCAAAAATGGTTCTGCTTTTGGGAGGGTGTTTCCAAGAGATGAGGAAGAAGCCGCCATTCTTTTGATGGAGCTTTCTTGTGGTCTTGTTCACACCTGTTGA 1083 45.52 GEKSIDGSRTDIDHQEQQLDEYQIKKGDNGSAAKYWMSSKMRLMQKMMKVGGGNSDQAAAAAVAAAGRRSNNNEGRSCCSSNGVRVCSDCNTTTTPLWRSGPQGPKVIPLLYLTNYFNFTGEKSIDGSRTDIDHQEQQLDEYQIKKGDNGSAAKYWMSSKMRLMQKMMKVGGGNSDQAAAAAVAAAGRRSNNNEGRSCCSSNGVRVCSDCNTTTTPLWRSGPQGPKVIPLLYLTNYFNFTSLCNACGIRQRKARRAMAEAANGGGGGAVVAAASGKELHKEKKSRLSWHGDDDDDEEVKKKKGNNRNMGEKCLESQSEGRNDGVLRLSKNGSAFGRVFPRDEEEAAILLMELSCGLVHTC 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1342721 1345432 - Cp4.1LG02g06040.1 Cpe02g00259 464208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00259 360 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 135 358 - -
Cpe02g00259 360 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 16 106 - -
Cpe02g00259 360 ProSiteProfiles GATA-type zinc finger domain profile. 81 104 IPR000679 GO:0006355|GO:0043565
Cpe02g00259 360 MobiDBLite consensus disorder prediction 278 317 - -
Cpe02g00259 360 Coils Coil 5 25 - -
Cpe02g00259 360 CDD ZnF_GATA 206 252 IPR000679 GO:0006355|GO:0043565
Cpe02g00259 360 Pfam GATA zinc finger 87 106 IPR000679 GO:0006355|GO:0043565
Cpe02g00259 360 Pfam GATA zinc finger 207 226 IPR000679 GO:0006355|GO:0043565
Cpe02g00259 360 ProSiteProfiles GATA-type zinc finger domain profile. 201 224 IPR000679 GO:0006355|GO:0043565
Cpe02g00259 360 SMART GATA_3 81 118 IPR000679 GO:0006355|GO:0043565
Cpe02g00259 360 SMART GATA_3 201 266 IPR000679 GO:0006355|GO:0043565
Cpe02g00259 360 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 254 - -
Cpe02g00259 360 Gene3D - 203 311 IPR013088 GO:0006355|GO:0008270
Cpe02g00259 360 Gene3D - 83 113 IPR013088 GO:0006355|GO:0008270
Cpe02g00259 360 Coils Coil 125 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00259 - - - cmax:111481233 375.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00259 Cpe-Chr2:1342721 Cpe12g00302 Cpe-Chr12:2009529 8.43E-13 dispersed
Cpe18g00361 Cpe-Chr18:5007752 Cpe02g00259 Cpe-Chr2:1342721 1.62E-08 wgd
Cpe02g00259 Cpe-Chr2:1342721 Cpe04g01058 Cpe-Chr4:9321980 4.38E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g104 . Blo12g01014 . . . Bpe02g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00259 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001864 2 2 2 1 4 2 3 2 2 2 2 2 1 2 2 2 2 5 3 2 2 2 2 2 2 2 2 4 2 2 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48990 PF00320 GATA 1.60E-07 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00259 Cpe_Chr02 FPKM 13.43719 13.898007 16.772825 15.845442 6.367171 3.964502 7.073275 18.134991 16.351683 17.562939