Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g00263 | ATGATGAAGAAAGGGAATTTAACGGTGGACGAACATCCGCCGCTGCTGCCACTGCCACCGTCGAAGAAGAAGCGGAATCTTCCCGGGAATCCAGACCCAGATGCTGAAGTGATCGCTTTGTCACCAAAAGCGCTTTTGACGACGAATAGATTCATATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCCGAGTTGCGTGCACCATCACCCGTCGAGGGCTCTCGGTGATCTTACTGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAGAAATGTTCGAAGAGATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGATTTGTGGCACTCGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGTGATGCGTTGGCTCAGGAAAGTACCAATTTTGCATCATCAGCGATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCTCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCCTAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCAGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATCATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATATTGATGAATAATCGAGCTAATAAAGATGGTGACAAATGCAGCGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCGTTGGCTCGACAGCCCGATCATCATATGTTCGAGAATGAGATAGTAAACGACCATCTGAATTTGGGTTCTTCTTCTTCCATGTTTGGATTGCATCTGAATCATCAAACCCAGACTATGTTTTGGCGTGATTAA | 1059 | 44.57 | MMKKGNLTVDEHPPLLPLPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQPIFSTLRQFSLKTENQDPFYPSTSNILNPFNPNPNPNPTSIGFGLAGPGSSLNPVFGSAWEMNSPNIMAFEEPSFEEALNGILMNNRANKDGDKCSGGGAEEITRDLLGLRALARQPDHHMFENEIVNDHLNLGSSSSMFGLHLNHQTQTMFWRD | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 1362081 | 1363966 | - | Cp4.1LG02g06010.1 | Cpe02g00263 | 464212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g00263 | 352 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 53 | 73 | IPR013087 | - | |
| Cpe02g00263 | 352 | Pfam | Zinc-finger double-stranded RNA-binding | 51 | 73 | IPR022755 | - | |
| Cpe02g00263 | 352 | Gene3D | Classic Zinc Finger | 32 | 98 | - | - | |
| Cpe02g00263 | 352 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 147 | IPR036236 | - | |
| Cpe02g00263 | 352 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 18 | 192 | - | - | |
| Cpe02g00263 | 352 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 51 | 73 | IPR013087 | - | |
| Cpe02g00263 | 352 | SMART | c2h2final6 | 51 | 73 | IPR013087 | - | |
| Cpe02g00263 | 352 | SMART | c2h2final6 | 127 | 147 | IPR013087 | - | |
| Cpe02g00263 | 352 | Gene3D | Classic Zinc Finger | 120 | 187 | - | - | |
| Cpe02g00263 | 352 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 192 | - | - | |
| Cpe02g00263 | 352 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00263 | Cpe-Chr2:1362081 | Cpe10g00600 | Cpe-Chr10:3504977 | 5.49E-112 | dispersed | |
| Cpe02g00263 | Cpe-Chr2:1362081 | Cpe03g01066 | Cpe-Chr3:8815274 | 3.22E-113 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48991 | PF12171 | zf-C2H2_jaz | 4.80E-05 | CL0361 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g00263 | K25870 | - | cmos:111446481 | 679.093 |