Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00263 ATGATGAAGAAAGGGAATTTAACGGTGGACGAACATCCGCCGCTGCTGCCACTGCCACCGTCGAAGAAGAAGCGGAATCTTCCCGGGAATCCAGACCCAGATGCTGAAGTGATCGCTTTGTCACCAAAAGCGCTTTTGACGACGAATAGATTCATATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCATAATCTTCCATGGAAGCTAAAACAAAGAAGCAATAAGGAAGTTAGGAAGAAGGTTTACGTGTGTCCCGAGCCGAGTTGCGTGCACCATCACCCGTCGAGGGCTCTCGGTGATCTTACTGGAATCAAGAAGCATTTTTGTCGGAAGCACGGTGAGAAGAAATGGAAGTGTGAGAAATGTTCGAAGAGATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGATTTGTGGCACTCGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGAGGGACAGTTTCATAACCCATAGAGCCTTTTGTGATGCGTTGGCTCAGGAAAGTACCAATTTTGCATCATCAGCGATGAACAATAGCAACCCAATTCAACCAATTTTCTCAACACTGCGCCAATTCTCACTCAAAACTGAAAACCAAGACCCTTTTTATCCTTCAACTTCCAACATCCTCAATCCCTTTAACCCTAACCCTAACCCTAACCCTACTTCGATCGGATTCGGGTTAGCCGGTCCTGGTTCGAGTCTTAATCCAGTGTTTGGTTCTGCATGGGAAATGAACTCTCCAAACATCATGGCTTTTGAAGAACCATCCTTTGAAGAAGCTCTAAATGGGATATTGATGAATAATCGAGCTAATAAAGATGGTGACAAATGCAGCGGCGGTGGCGCGGAGGAGATAACGAGAGATTTATTGGGGTTGAGAGCGTTGGCTCGACAGCCCGATCATCATATGTTCGAGAATGAGATAGTAAACGACCATCTGAATTTGGGTTCTTCTTCTTCCATGTTTGGATTGCATCTGAATCATCAAACCCAGACTATGTTTTGGCGTGATTAA 1059 44.57 MMKKGNLTVDEHPPLLPLPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFASSAMNNSNPIQPIFSTLRQFSLKTENQDPFYPSTSNILNPFNPNPNPNPTSIGFGLAGPGSSLNPVFGSAWEMNSPNIMAFEEPSFEEALNGILMNNRANKDGDKCSGGGAEEITRDLLGLRALARQPDHHMFENEIVNDHLNLGSSSSMFGLHLNHQTQTMFWRD 352
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 1362081 1363966 - Cp4.1LG02g06010.1 Cpe02g00263 464212
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00263 352 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Cpe02g00263 352 Pfam Zinc-finger double-stranded RNA-binding 51 73 IPR022755 -
Cpe02g00263 352 Gene3D Classic Zinc Finger 32 98 - -
Cpe02g00263 352 SUPERFAMILY beta-beta-alpha zinc fingers 50 147 IPR036236 -
Cpe02g00263 352 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 192 - -
Cpe02g00263 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Cpe02g00263 352 SMART c2h2final6 51 73 IPR013087 -
Cpe02g00263 352 SMART c2h2final6 127 147 IPR013087 -
Cpe02g00263 352 Gene3D Classic Zinc Finger 120 187 - -
Cpe02g00263 352 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 192 - -
Cpe02g00263 352 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00263 Cpe-Chr2:1362081 Cpe10g00600 Cpe-Chr10:3504977 5.49E-112 dispersed
Cpe02g00263 Cpe-Chr2:1362081 Cpe03g01066 Cpe-Chr3:8815274 3.22E-113 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48991 PF12171 zf-C2H2_jaz 4.80E-05 CL0361 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00263 K25870 - cmos:111446481 679.093