Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00268 ATGGAGAGTAACTCTAAAAGCAAGTTCAAGAGGGTTTGCGTCTTCTGCGGCAGCAACTCTGGCCATCGCAAAGTCTTCAGCGATGCCGCTCTTGATTTGGGAAATGAACTGGTTGAGAGGAAGATTGATTTGGTGTACGGTGGGGGAAGTGTTGGTTTGATGGGATTGATATCACAAACTGTATACGATGGAGGCTGCCATGTTCTTGGGATCATTCCGAAAGCTCTGATGCCTCATGAGATTTCTGGGGAAACTGTGGGAGAGGTAAGAACAGTTTTGGACATGCATGAACGAAAAGCTGCGATGGCTCGAGAATCCGATGCTTTCATTGCTCTTCCTGGAGGGTATGGGACTATGGAAGAGCTGTTGGAGATGATAACGTGGGCGCAACTCGGTATCCACAAGAAACCGATTGGCCTGCTTAATGTTGATGGTTACTACAACTCTTTGTTGGCACTATTCGATAATGGCGTGGTAGAAGGTTTCATTAAGCCCGTTGCTCGAGAAATTGTGATATCTGCTCCAACAGCAAAGGAACTAATGGAAAAAATGGAGATTTCTGGGGAAACTGTGGGAGAGGTAAGAACAGTTTTGGACATGCATGAACGAAAAGCTGCGATGGCTCGAGAATCCGATGCTTTCATTGCTCTTCCTGGAGGGTATGGGACTATGGAAGAGCTGTTGGAGATGATAACGTGGGCGCAACTCGGTATCCACAAGAAACCGATTGGCCTGCTTAATGTTGATGGTTACTACAACTCTTTGTTGGCACTATTCGATAATGGCGTGGTAGAAGGTTTCATTAAGCCCGTTGCTCGAGAAATTGTGATATCTGCTCCAACAGCAAAGGAACTAATGGAAAAAATGGAG 870 45.98 MESNSKSKFKRVCVFCGSNSGHRKVFSDAALDLGNELVERKIDLVYGGGSVGLMGLISQTVYDGGCHVLGIIPKALMPHEISGETVGEVRTVLDMHERKAAMARESDAFIALPGGYGTMEELLEMITWAQLGIHKKPIGLLNVDGYYNSLLALFDNGVVEGFIKPVAREIVISAPTAKELMEKMEISGETVGEVRTVLDMHERKAAMARESDAFIALPGGYGTMEELLEMITWAQLGIHKKPIGLLNVDGYYNSLLALFDNGVVEGFIKPVAREIVISAPTAKELMEKME 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1385303 1388526 + Cp4.1LG02g06140.1 Cpe02g00268 464217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00268 290 PANTHER LOG FAMILY PROTEIN YJL055W 185 290 - -
Cpe02g00268 290 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG4-RELATED 185 290 - -
Cpe02g00268 290 TIGRFAM TIGR00730: TIGR00730 family protein 190 290 IPR005269 GO:0009691|GO:0016787
Cpe02g00268 290 TIGRFAM TIGR00730: TIGR00730 family protein 10 185 IPR005269 GO:0009691|GO:0016787
Cpe02g00268 290 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG4-RELATED 4 185 - -
Cpe02g00268 290 Pfam Possible lysine decarboxylase 185 289 IPR031100 -
Cpe02g00268 290 Pfam Possible lysine decarboxylase 54 184 IPR031100 -
Cpe02g00268 290 Gene3D - 1 184 - -
Cpe02g00268 290 Gene3D - 185 290 - -
Cpe02g00268 290 PANTHER LOG FAMILY PROTEIN YJL055W 4 185 - -
Cpe02g00268 290 SUPERFAMILY MCP/YpsA-like 181 289 - -
Cpe02g00268 290 SUPERFAMILY MCP/YpsA-like 8 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00268 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101210270 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00268 Cpe-Chr2:1385303 Cpe06g00244 Cpe-Chr6:1300420 2.03E-67 dispersed
Cpe02g00267 Cpe-Chr2:1384042 Cpe02g00268 Cpe-Chr2:1385303 1.38E-44 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g81 . . . . . . . . . . Cma01g01728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00278 Bda01g01332 . . . Bma01g00920 . . . . . . . . . Cpe02g00268 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006617 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00268 Cpe_Chr02 FPKM 12.335532 12.437819 14.735474 16.818256 14.936394 14.534348 12.497252 19.361984 21.143478 19.431797