Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00275 ATGGAGGATCGGGAGGAGGAAGAGAGGGCGGAAGAAGAGGTGCAAGGTTCGAGTCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCCTCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGTGACATATATGCCATGAAAAAATTGAAGAAATCTGAAATGCTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTACTTGATCATGGAATATCTTCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAGGACACATTGACTGAAAATGTGGCTAAATTTTACATTGCACAGAGTGTTCTTGCAATAGAATCTATCCACAGGCACAACTATATCCACAGGGACATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCTTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAGTTTGGCAGAACCAATGGACATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTATACCACTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACAGTTGGAACACCTGATTACATAGCTCCAGAAGTATTACTCAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCTCTCGGTGCAATTATGTATGAGATGCTCGTTGGCTATCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCACTGGAAAAATCAACTGAAGTTTCCAGAGGATGCTAAGTTGTCAATTGAAGCAAAGGATCTCATCTGTAGGTTGCTTTGCGACGTTGAGCATAGACTTGGTACTGGAGGTGCATACCAAATTAAAGCTCATCCGTGGTTCAAAGATGTCATCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTTAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCCGGACCCTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACGTACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACTCGATTCTCAGAGATTGTCAATGAAACAGCCTCCGACTGATATATTAAATGGCACTGGGGGAGACTATGCAGCCGAACTAATAGCCAGTGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGTTGCCATAA 1551 42.88 MEDREEEERAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDESLAEPMDIDDNRSSWKSPSEQLYHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNQLKFPEDAKLSIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVIWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSLDSQRLSMKQPPTDILNGTGGDYAAELIASEAEMQMLAVSGDPMLP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1427219 1436927 + Cp4.1LG02g06110.1 Cpe02g00275 464224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00275 516 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Cpe02g00275 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe02g00275 516 Pfam Protein kinase domain 286 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00275 516 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00275 516 CDD STKc_NDR_like 91 459 - -
Cpe02g00275 516 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 510 - -
Cpe02g00275 516 MobiDBLite consensus disorder prediction 1 20 - -
Cpe02g00275 516 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
Cpe02g00275 516 Gene3D Transferase(Phosphotransferase) domain 1 293 412 - -
Cpe02g00275 516 SUPERFAMILY Protein kinase-like (PK-like) 90 440 IPR011009 -
Cpe02g00275 516 Gene3D Phosphorylase Kinase; domain 1 413 423 - -
Cpe02g00275 516 Gene3D Phosphorylase Kinase; domain 1 91 176 - -
Cpe02g00275 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 510 - -
Cpe02g00275 516 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00275 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cpe02g00275 516 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cpe02g00275 516 SMART pkinase_C_6 395 460 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe02g00275 516 SMART serkin_6 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00275 Cpe-Chr2:1427219 Cpe04g01042 Cpe-Chr4:9213627 0 dispersed
Cpe18g00342 Cpe-Chr18:4868147 Cpe02g00275 Cpe-Chr2:1427219 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62202 PF00069 Pkinase 4.20E-43 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00275 K08790 - csv:101212228 1003.82