Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00290 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACAAGAGGGAAGAGGAACTGAAGATTGGTGAAATGAAACCCATGTGTGAGGATGTTTTTGACAACCCGGATGACTCTGATCGCATTGTCCGAAATGGGGATGATTCTCAAGGGACTGACCCGCTTGCGATTGCTGTTGATGGGCCTGACCGCCACGACGCTGATCGACTGATATTGTTTGAGGATATGGTCAGAGCAATGCACGATGACGGCGATGATGACGTCGGCGGCGGCGGTGGGGCTATCAATCCTCGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGTGGGGAGAGTAGTAGAGCCTCGGCTTTGGCTTTGTCTTCTACAGTGGAGACTTCTATTGAGGATCGCGATCGCGATGTCCACCATAAGCGCGCTAAAGTTCTCTCCAAATTCAATGAGTACTCCTTTGCAACTCCATGGCTATTGGGTGCTGGAAATCTTACAAGAGATCACGATTTTAGTCCTGGATCATCTTCAATTATGTCTAAGAGTGATTTTTTCAGTCATGGTTCTTCATCAAACAGAGTTAACAACGACGGAGATTTTGAATCTAGTTTTGGCAATGATGATGAGATAAATGAGAATGGGGCCTGTAAATTAGAGGGATCTGAAGTAAGAATAGATCTTACGGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAGTTTGAGGATATGTGTGGACGGTATCCTAATGCGACAGAGGTGAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCAATGAAAGCAGTTTTTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACATTTTTCCATGCCCTGGCTGATTGCCATTTGTTGAAGAGCTTGACTGTCAACGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCACGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGTATATCTGTCAGATGTCCACAACTTGAAACATTGTCTTTGAAGCGCAGCAACATGGCACATGCTGGTCTTAGTTGCCCTCTTCTTCGTGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCGATTCGCTCAGCAGCTATTTCGTGCCCACAATTGGAATCTCTTGACATGTCTAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTGCCATGACCTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGATTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACTGCAGTATCTAGTTGTTCTAGGTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTGTTGACTTCTGTGTCACTGGATCTTCCTCGTTTGCAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGATTTGAGTTTACAGAGTGTTAAATTGTCATCCATTATGGTCTCTAATTGTCCTTCTCTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTACAAGATGTGGACCTCACAGATTGTGAATCTTTAACAAATTCTATTTGTGAGGTCTTTAGTGACGATGGTGGATGCCCGATGTTGAAATCACTTGTTCTAGATAACTGCGAGAGTTTGACTGCCGTTCAATTCTGTAGCAATTCTTTAGAAAGTCTTTCCCTTGTCGGTTGTCGGGCAGTCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAAGTATCTCTAGATGGCTGTGATCATCTTGAAAGGGCATCATTTTCCCCTGTTGGTCTGCGATCACTAAACCTGGGAATTTGTCCCAAATTGAATGAATTAAGACTTGAGGCCCCTCGTATGGATTTACTTGAGTTGAAAGGCTGTGGTGGATTGTCTGAGGCGGCCATCAATTGCCCTCGTCTAACATCGTTGGATGCTTCGTTTTGTTGCCTACTGAAAGACGAGTGCTTGTCTGCAACAACTGCCTCGTGTCCACAGATTGAGTCGTTAATTCTGATGTCATGTTCTTCGGTTGGTTCAATGGGACTTTACTCTCTGCAATGTCTTCCGAAGTTGGTTGTGCTTGATTTATCATATACATTTTTGACGAGCTTGCAGCCAGTCTTTGAGTCTTGTGCTCAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAACCTCTCTACAAGAAAGGTGCTCTTCCAGCTCTTCAGGAGTTAGATTTGTCTTACGCGATACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACAGTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCACGATCTAAATTGGGATTGTAGCATTAGGCAGCTTTCGTCGTCGGGCACCCCCCTTCCTCTTGGTCCGGCCACCATTGATGATATTGAGAAACCAGTTGCACAGCCAAACCGTTTGTTACAGAATCTCAATTGTGTAGGTTGTCAAAACATTAGGAAGGTTCTCATTCCTCCAGCCGCACGTTGTTTTCATTTATCATCGTTGAACCTATCTCTGTCTGCAAATCTCAAGGAAGTTGACGTTTCTTGTTACAACCTATGCTTTCTTAACTTGAGTAATTGTTGCTCTCTGGAGGTTTTGAGACTCGACTGCCCGAGGCTGACCAGCCTCTTTCTCCTGTCCTGCAACATTGAGGAAGAAGCAGTCGAAGCTGCAATATCAAAATGTAGCATGCTCGAGACGTTAGATGTCCGGTCTTGTCTGAAGATCTCGCCAATTAGCATGGTACAACTGCGTATCGCTTGCCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 3069 43.83 MTIWCCLCFTVGEEDKREEELKIGEMKPMCEDVFDNPDDSDRIVRNGDDSQGTDPLAIAVDGPDRHDADRLILFEDMVRAMHDDGDDDVGGGGGAINPRNFSFGILHQSEGGESSRASALALSSTVETSIEDRDRDVHHKRAKVLSKFNEYSFATPWLLGAGNLTRDHDFSPGSSSIMSKSDFFSHGSSSNRVNNDGDFESSFGNDDEINENGACKLEGSEVRIDLTDDLLHMVFSFLDHINLCRAAIVCRQWRAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVFSLRNLEVLTLGRGQLGDTFFHALADCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAHAGLSCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIAMTCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAVSSCSRLKVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDDGGCPMLKSLVLDNCESLTAVQFCSNSLESLSLVGCRAVTSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCCLLKDECLSATTASCPQIESLILMSCSSVGSMGLYSLQCLPKLVVLDLSYTFLTSLQPVFESCAQLKVLKLQACKYLTDSSLEPLYKKGALPALQELDLSYAILCQSAIEELLACCTQLTHVSLNGCVNMHDLNWDCSIRQLSSSGTPLPLGPATIDDIEKPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSANLKEVDVSCYNLCFLNLSNCCSLEVLRLDCPRLTSLFLLSCNIEEEAVEAAISKCSMLETLDVRSCLKISPISMVQLRIACPSLKRIFSSLSPT 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1501554 1509293 + Cp4.1LG02g05910.1 Cpe02g00290 464239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00290 1022 SUPERFAMILY L domain-like 360 703 - -
Cpe02g00290 1022 Gene3D Ribonuclease Inhibitor 692 779 IPR032675 -
Cpe02g00290 1022 PANTHER OS10G0396666 PROTEIN 128 983 - -
Cpe02g00290 1022 Gene3D Ribonuclease Inhibitor 470 544 IPR032675 -
Cpe02g00290 1022 Gene3D Ribonuclease Inhibitor 780 1021 IPR032675 -
Cpe02g00290 1022 Pfam F-box-like 228 267 IPR001810 GO:0005515
Cpe02g00290 1022 SMART fbox_2 226 266 IPR001810 GO:0005515
Cpe02g00290 1022 Gene3D Ribonuclease Inhibitor 545 691 IPR032675 -
Cpe02g00290 1022 Gene3D Ribonuclease Inhibitor 221 469 IPR032675 -
Cpe02g00290 1022 SMART LRR_CC_2 580 604 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 958 982 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 739 764 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 713 738 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 471 496 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 608 638 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 398 423 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 983 1008 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 840 869 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 517 542 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 650 680 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 424 449 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 787 812 IPR006553 -
Cpe02g00290 1022 SMART LRR_CC_2 450 470 IPR006553 -
Cpe02g00290 1022 SUPERFAMILY RNI-like 650 1016 - -
Cpe02g00290 1022 ProSiteProfiles F-box domain profile. 220 266 IPR001810 GO:0005515
Cpe02g00290 1022 SUPERFAMILY L domain-like 266 387 - -
Cpe02g00290 1022 PANTHER OS10G0396666 PROTEIN 128 983 IPR044703 GO:0010252|GO:1905393
Cpe02g00290 1022 SUPERFAMILY F-box domain 225 274 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00290 - - - cmo:103493700 1723.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00290 Cpe06g00258 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00290 Cpe-Chr2:1501554 Cpe12g00236 Cpe-Chr12:1578988 1.63E-08 dispersed
Cpe12g01057 Cpe-Chr12:8795466 Cpe02g00290 Cpe-Chr2:1501554 2.26E-07 dispersed
Cpe17g00883 Cpe-Chr17:6860334 Cpe02g00290 Cpe-Chr2:1501554 1.07E-06 dispersed
Cpe02g00290 Cpe-Chr2:1501554 Cpe06g00258 Cpe-Chr6:1380671 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00290 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 13.109709 12.074116 12.274368 0.0 0.0 0.0