Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00292 ATGAAGAGGGCGGCCGCCATGGCATTTCCTATTCAGCTTCTTATTCTGGTTTTTCTCTTCTGTGTTAGCGCCGGTGTGGTGGATTCCGATGATGGAGCTACGTTGTTGGAGATGAAGAAATCACTGAGGGATGTGGATAATGTTTTATATGATTGGACAAGCTCACCTTCTTCAGATTACTGTATATGGAGAGGTGTCACCTGTGACAACGCCAGTCTCAATGCTATCACTCTTAATCTTTCTGGTCTCAATCTGGTCGGAGAAGTTTCTCCTTCGGTCGGGAAGCTCAAGGGCCTGCAAACTTTAGTTGTGAAAAATAATAGACTGATTGGACCAATCCCTTCAACATTGTCTCAGATTCCAAACTTGAAGGTCTTGGGATTGCGTGGCAACAATTTGGTGGGCACACTGTCTCCAGATATCTGTCAGCTCACTGGCTTATGTGATGTGAGAAACAACAGTTTAACAGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCACTGGAGAGATACCATTCAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTGCAGGGTAACCAGTTGTCAGGTCCCATCCCACCAGTCATTGGGAATCTGACGTACACTGAGAAACTGTACTTGCATAGTAACAAGCTCACTGGTTCCATTCCAGCAGAGCTCGGGAATATGACAAAGCTCCATTATCTGGAACTGAACGATAATCATCTTACTGGGAGTATTCCAGCCGAGCTAGGGAAACTAACCGATTTGTTCGACCTAAATGTTGCTAATAACAATCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCACGGAAATAAGTTGAACGGAACGATTCCGCTGTCTTTCCAGAGGCTAGAGAGTATGACTTACCTGAATCTGTCCTCAAATGATCTACGAGGTCCTATTCCAGTTGAGCTATCTCGAATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAGTTAATGGCACAATTTCTTCGTCGTTCGGAGATCTCGAACATCTCCTAAAGCTAGATATTTCACACAATCAGCTCTCTGGGTTCATTCCTCAAGAACTGACACAACTTCAAAATCTGCTCTCCTTGAGACTTGAAAACAACAATCTATCCGGGGACGTGAGGTCGTTGATAAACTGCCCGAGTCTTACCGAACTAAACGTATCTAATAACAATCTAGCTGGTTACATTCCAACAAGCAACAACTTCTCTAGGTTCTCATTTGACAGTTTCCTTGGAAATCCTGCGCTCTGTGGATATTGGAATAGCAACGTCTATCCCTCCGCTATCCTCGGGATCGCTCTTGGTGCTCTCGTAATTCTTCTAATGATCCTCCTAACCGTGTGCCGACCGAACAACACAATACCTTTTCCAGATGGATCACTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTAATCCTTCACATGAACATGGCACTTCACGTGTACGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATAATCGGACATGGAGCTTCAAGCACAGTCTACAAATGTGTACTCAAGAATTGCAAACCTGTGGCTATCAAAAAGCTCTACTCTCACCAGCCCCTAAGCATGAACGCGTTCGAGACTGAGCTCGAAACCGTCGGTAGCATCAAGCACAGAAATCTAGTCGGCCTCCAAGGATACTCCTTCTTCGGCATTGTTTTACTTGAACTACTCACTGGAAGGAAAGCTGTAGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAACGCGGTAATGGAGACGGTTGATCCTGAAATAACTGTAACTTCCAAGGATCTTGGAGCTGTAAAGAAGGCGTTTCAGCTTGCTCTCCTGTGTACCAAGAGGCAGCCATCCGATAGGCCAACGATGCACGAAGTAACGCGCGTCATCGGCAGTCTTCTGCCCTCGGCAGCACCACTGAAGCCAATACCATCTGTTGCATCACTGCCCCCATCTGCAGGAGTCCCTAGCTACAAGGATGAATATGCAAAGCTAAAAACGCCACACGTGCTGAACTGCCCGTCGATGAGCACCTCAGACGCCCAGCTCTTCCTCAAGTTTGGAGAGGTTATATCACAGAACAGTGAGTAA 2190 45.16 MKRAAAMAFPIQLLILVFLFCVSAGVVDSDDGATLLEMKKSLRDVDNVLYDWTSSPSSDYCIWRGVTCDNASLNAITLNLSGLNLVGEVSPSVGKLKGLQTLVVKNNRLIGPIPSTLSQIPNLKVLGLRGNNLVGTLSPDICQLTGLCDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGSIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPLSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKVNGTISSSFGDLEHLLKLDISHNQLSGFIPQELTQLQNLLSLRLENNNLSGDVRSLINCPSLTELNVSNNNLAGYIPTSNNFSRFSFDSFLGNPALCGYWNSNVYPSAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKKLYSHQPLSMNAFETELETVGSIKHRNLVGLQGYSFFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDPEITVTSKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIGSLLPSAAPLKPIPSVASLPPSAGVPSYKDEYAKLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1515662 1527468 + Cp4.1LG02g05930.1 Cpe02g00292 464241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00292 729 Gene3D Phosphorylase Kinase; domain 1 489 583 - -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 11 101 - -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 584 716 - -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 123 211 - -
Cpe02g00292 729 SUPERFAMILY Protein kinase-like (PK-like) 584 679 IPR011009 -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 101 - -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 584 716 - -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 200 583 - -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 123 211 - -
Cpe02g00292 729 ProSitePatterns Protein kinases ATP-binding region signature. 525 548 IPR017441 GO:0005524
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 95 128 - -
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 200 583 - -
Cpe02g00292 729 SUPERFAMILY Protein kinase-like (PK-like) 497 582 IPR011009 -
Cpe02g00292 729 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Cpe02g00292 729 SUPERFAMILY L domain-like 56 438 - -
Cpe02g00292 729 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cpe02g00292 729 Pfam Leucine rich repeat 335 394 IPR001611 GO:0005515
Cpe02g00292 729 Gene3D Transferase(Phosphotransferase) domain 1 584 671 - -
Cpe02g00292 729 Gene3D Ribonuclease Inhibitor 191 453 IPR032675 -
Cpe02g00292 729 SMART tyrkin_6 519 663 IPR020635 GO:0004713|GO:0006468
Cpe02g00292 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 95 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00292 K20718 ER; LRR receptor-like serine/threonine-protein kinase ERECTA [EC:2.7.11.1] - cpap:110809270 940.643
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00292 Cpe06g00261 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00292 Cpe-Chr2:1515662 Cpe05g00669 Cpe-Chr5:4082738 0 dispersed
Cpe02g00292 Cpe-Chr2:1515662 Cpe06g00261 Cpe-Chr6:1405488 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g166 Blo01g01442 . . . . . . . . . Cma01g01701 . . . . . Cpe06g00261 . . . . . . . . . . . . . . Cone4ag1700 Cone7ag1617 . . Lsi04g01384 . . . . . . . . . . . . . . . . Car01g01317 . . Cpe02g00292 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001314 3 2 3 2 3 1 5 2 2 2 2 1 4 1 0 4 1 0 3 1 2 2 2 1 1 2 2 2 0 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00292 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.900398 0.730402 0.0