Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00295 ATGCTGTCTCATTTGAGTAGAAGTATGGGGTTACTCTGTAGCAGAAATCGTCGTTACAATAAACAAGATACTGAAGAGAATGTGCAGATAAAATTGTTGTTCCAAACTGGGTTTGATGAGGCAGAGCTGAAGAGCTATATTCCAGTCATTCATGCAAATGTGTATCAGACTATAAAAGTATTACACGATGGTTCAAAGGAGCTCGCTCAAAATGATATAGAGTTCTCGAAGTATGTTTTATCCAGTGAAAATAAGGACATTGGTGAGAAATTATCCGACATTGGCGGTAGATTGGATTACCCGCGTTTGACTAGGGAGCATGCACACGATATAGAGACTCTATGGAACGATGCTGCAATTCAGGAAACGTATGCACGTGGTAACGAACTACAGGTTCCAGATTGTGCACATTATTTCATGGAAAATTTGCAGAGATTATCTGATGTAAATTACATTCCAACTAAGGAAGACGTGCTCTACGCAAGAGTTCGTACAACGGGTGTTGTCGAAATCCAGTTTAGTCCCGTTGGAGAAAATAAAAAGAGCGGAGAAGTGTATCGACTCTTTGATGTCGGTGGACAGAGAAACGAGAGGCGGAAATGGATTCATCTTTTCGAAGGTGTTACAGCAGTAATCTTTTGTGCTGCTATTAGTGAGTATGATCAAACACTTTTCGAGGACGAACAGAAGAACCGAATGATGGAGACAAAGGAACTTTTTGAGTGGGTTCTGAAACAAGAGTGTTTTGAGAAAACGTCGTTCATGCTTTTTCTCAACAAGTTCGATATATTCGAGAAAAAGGTTCTACAAGTCCCTCTTAGTGTGTGTGAATGGTTCAGAGATTACCAGCCGGTTTCGACTGGGAAACAAGAGATCGAGCATGCCTACGAGTTCGTGAAGAAAAAATTCGAGGAGTTGTATTTTCAGACGACGTCACCAGATCGAGTAGATCGGGTGTTTAAGGTATACAGAACGACTGCTCTCGATCAGAAGCTCGTAAAGAAGACGTTCAAACTCGTAGACGAAACTTTGAGGCGGAGAAACCTGTTGGAGGCCGGGTTATTGTGA 1068 41.67 MLSHLSRSMGLLCSRNRRYNKQDTEENVQIKLLFQTGFDEAELKSYIPVIHANVYQTIKVLHDGSKELAQNDIEFSKYVLSSENKDIGEKLSDIGGRLDYPRLTREHAHDIETLWNDAAIQETYARGNELQVPDCAHYFMENLQRLSDVNYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLKQECFEKTSFMLFLNKFDIFEKKVLQVPLSVCEWFRDYQPVSTGKQEIEHAYEFVKKKFEELYFQTTSPDRVDRVFKVYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1537135 1543773 - Cp4.1LG02g05680.1 Cpe02g00295 464244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00295 355 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 29 355 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 29 355 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 SMART galpha_1 13 354 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 Gene3D - 29 343 IPR027417 -
Cpe02g00295 355 ProSiteProfiles G-alpha domain profile. 7 355 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 CDD G-alpha 29 349 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 PRINTS Alpha G protein (transducin) signature 254 263 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 PRINTS Alpha G protein (transducin) signature 186 203 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 PRINTS Alpha G protein (transducin) signature 208 236 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 PRINTS Alpha G protein (transducin) signature 151 173 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 Pfam G-protein alpha subunit 29 343 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe02g00295 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 352 IPR027417 -
Cpe02g00295 355 SUPERFAMILY Transducin (alpha subunit), insertion domain 38 163 IPR011025 GO:0007165
Cpe02g00295 355 PRINTS Plant G protein alpha subunit signature 307 319 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 PRINTS Plant G protein alpha subunit signature 63 77 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 PRINTS Plant G protein alpha subunit signature 87 101 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 PRINTS Plant G protein alpha subunit signature 48 61 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 PRINTS Plant G protein alpha subunit signature 171 186 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 PRINTS Plant G protein alpha subunit signature 290 305 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 PRINTS Plant G protein alpha subunit signature 241 252 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe02g00295 355 Gene3D - 39 164 IPR011025 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00295 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - csv:101216232 659.062
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00295 Cpe06g00263 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00295 Cpe-Chr2:1537135 Cpe14g00990 Cpe-Chr14:8357647 4.15E-48 dispersed
Cpe02g00295 Cpe-Chr2:1537135 Cpe06g00263 Cpe-Chr6:1419342 7.88E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00295 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0