Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00301 ATGGCGGACCGTCGGAACTCAGGCAGTGAAACGAATGAAGAGTCGGGTGGTCAGATTTTGAAGTACAAAGGTGTACGAAAGAGGAAATGGGGCAAATGGGTCTCTGAAATTCGGCTGCCCAACAGCCGTGACCGTATTTGGTTGGGTTCTTACGACAAACCAGAGCAAGCGGCGCGTGCTTTCGACGCGGCGCAATTCTGTCTACGCGGTCCCCATGCGAAGTTTAATTTTTCAGATAGTCCGCCTGAAATTGACGGCGGCGACCGGCTTTCGGCTCAGGAGATTCAGGCAGCCGCAGCGAAGTTCGCTGTCGAGCACGGCGGAGAGGAACGAGTTAAAACGGGTAGTAGTAGTAGCAATGAGGAGGCTGTAACCGGTAAACAGTGTTCAGGGGCGGTTGACAGCGGAGATGGAAGCAGCGTTTGGGCGGCTTGGGACTTGTTGGACGGTGGTTCGGATTTTGGGTTCGGTAATATTATGTGTCGGAATGAAATGGTCTATGATAGCGACATTATTTTCCCGGGACAAGAAAATATGGAGGATAGGTTTGTTGATGGTGGAGAATATTTTTGTCACGAGGCTAATTTCCTATGGAACTTTGATAATCATTAA 612 50.0 MADRRNSGSETNEESGGQILKYKGVRKRKWGKWVSEIRLPNSRDRIWLGSYDKPEQAARAFDAAQFCLRGPHAKFNFSDSPPEIDGGDRLSAQEIQAAAAKFAVEHGGEERVKTGSSSSNEEAVTGKQCSGAVDSGDGSSVWAAWDLLDGGSDFGFGNIMCRNEMVYDSDIIFPGQENMEDRFVDGGEYFCHEANFLWNFDNH 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1574062 1574673 - Cp4.1LG02g05660.1 Cpe02g00301 464250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00301 203 MobiDBLite consensus disorder prediction 109 134 - -
Cpe02g00301 203 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Cpe02g00301 203 MobiDBLite consensus disorder prediction 1 20 - -
Cpe02g00301 203 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Cpe02g00301 203 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Cpe02g00301 203 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Cpe02g00301 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 10 200 - -
Cpe02g00301 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 200 - -
Cpe02g00301 203 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Cpe02g00301 203 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Cpe02g00301 203 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Cpe02g00301 203 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00301 - - - cmax:111480951 384.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00301 Cpe-Chr2:1574062 Cpe13g01177 Cpe-Chr13:9289151 1.25E-22 dispersed
Cpe18g00295 Cpe-Chr18:4493873 Cpe02g00301 Cpe-Chr2:1574062 1.23E-39 wgd
Cpe02g00301 Cpe-Chr2:1574062 Cpe04g01002 Cpe-Chr4:9005128 1.26E-37 wgd
Cpe02g00301 Cpe-Chr2:1574062 Cpe06g00268 Cpe-Chr6:1460960 1.22E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g185 . Blo12g01035 . Bda03g00119 . . . . . . Cma01g01691 . Car09g00328 . Sed11g0856 . . Bhi04g01537 Tan02g1566 Cmetu03g1197 . Hepe08g1454 . Lcy13g2235 Cla05g01643 Cam05g1753 Cec05g1762 Cco05g1818 Clacu05g1744 Cmu05g1629 Cre05g1758 . . Cone17ag0957 Cone20ag0301 Lsi04g01372 . . . . . . . . Bpe04g00104 . . Sed13g1932 . Cmo09g00380 Cma09g00378 . Car01g01306 Car05g00886 . Cpe02g00301 Bhi09g03062 Tan01g3504 Cmetu07g1108 . Hepe01g1929 Mch11g0466 . Cla08g00976 Cam08g1424 Cec08g1002 Cco08g1125 Clacu08g1130 . Cre08g0912 Lsi08g00823 . Chy03g00645 Cme07g00162
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009714 2 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48993 PF00847 AP2 3.40E-13 CL0081 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00301 Cpe_Chr02 FPKM 6.064762 6.403386 3.750171 4.038363 30.73176 24.906073 29.661856 0.705384 0.989173 0.900251