Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00308 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATCGAAGCCCTTACTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCTACAATAGTCGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCATCACAATTACAATACCTTGCAAAACAGTGGGAGTATAAACAAGCAAATGCTGTACGTCTCCTTAGAGAGGAACTTGACATCCTAAGCAAGCAGAGAAAAGAAGTCGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGACGCAGAGTATGGTACAGTGACATACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAAATACTTGCAGAGAAACTCCAGGAAAACGTAAAAAATATTGAAAAGCAGTCCTCGCCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAATTGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCTAGTTTGGAAGAAGAGGATATTATAGGAAGAACTGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCACAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTGTTTGGGCTGAAGACCTTTTTGATATATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACGATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAACTTCGTGAGGAGATAGCAGTACAAAAGGCAAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCACGAAATTAGATCCCCACTGTCTGGAGTTGTTAGTATGGCTGAGATCTTGTCCACCACAAAACTTGACCGGGAACAACGTCATCTATTGGAAGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAACTACCAAATTCCGTCCAAGGGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCCTCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTTATTGGAGATGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTCTATGTGTTACCCTATCCACCCATGGGGAAAGGAGAAGAGTGCCATAAGAAATCAACGGCTGATAACTCAACAGTTTCGGCGCATGGTTTGCAAGGAGGAACATGTCTTCCAGCCCCTCAGAATGGCTTGCGTGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAACAAGAGTGAAACCATAATGAATGGAAATAGAGAAAGCAAATCTTGTTCTCCAGAAACGACGGTATGGATACGTTGTGATGTATACGACACGGGAATTGGAATACCAGAAAATGCATTACCAAGCCTTTTTAAGAGGTACATGCAAGCTAGTGCTGATCACGCTCGGAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCAACATTTACCTTTGTATTGCCATACAAGGTTTCAACCAGCAGCAGCAGCAGCAGCACTTCCGACGATTCCGATGAGCTCTCAGATGAAGAGTCCACAGATGAAGAAATGACTGAGGGTTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCATCTTCTAATGGACCCACAAGGATGATCCCAAACTCAGTTCGATATCCCAACTCGACCAAACTCAATGGATTTGCGGACGGTGGTTCTTATCATATTCCTTCAAACAACATCACTCCACAACCACAAGAGACTGCTCTTAGAGATTTCCGTTTAGGCAATGCCACATTAACTTCGAGCGAATCACAGTATTCATTAAGTCAGATCAATTCAAATCTTGGTAAGGAGAAATCAACAAACCAACCCGACGCAAATGCTCGGTTCCAAAATGCGAACGTGAATTCCATTCAACGGTTGGAAACAAAGCAAGAAGATACATTGGAAAAGCCAAGTAGTAAACTCCAAAAAACAGATCAGGGTAAAGAGAGGTCCGATGCAAGTTCCCACTGTAGAACTGCCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGGCTCAATCCATGATGAAGAAGTTTGGCCAAAAAATCGACGTGGTAACCAATGGAATTGAAGGTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTGTTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCGGCTGTAAATGCTGGAATCGAGCCAACTACTCCTTGTTGGACTCCCTCATCCCGTAAAAGAATGCCCATCATTGCTATGACGGCGAATACATTGTCAGAAAGCGCGGATGAGTGTTATGAAAACGGTATGGACTCATTCGTATCAAAGCCAATAACATTCCAAAAGTTGAAAGAATGTCTTGAGCAATATTTACCACAACGTCCCTTGTAA 3012 41.83 MVCEMETDVIEDMDIEALTSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVVQSKRVEIDAEYGTVTYWKQRAMDLEKLLEASLQREQILAEKLQENVKNIEKQSSPVEELSQILKRADNFLHFVLQNAPIVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLEVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPMGKGEECHKKSTADNSTVSAHGLQGGTCLPAPQNGLRGQKHGDRNHLHCDAPGTPNKSETIMNGNRESKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTSSSSSSTSDDSDELSDEESTDEEMTEGFFQFQPHSFSSLSSSNGPTRMIPNSVRYPNSTKLNGFADGGSYHIPSNNITPQPQETALRDFRLGNATLTSSESQYSLSQINSNLGKEKSTNQPDANARFQNANVNSIQRLETKQEDTLEKPSSKLQKTDQGKERSDASSHCRTASSGSEVTMALEPRILLVEDNKTNIMVAQSMMKKFGQKIDVVTNGIEGVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIEPTTPCWTPSSRKRMPIIAMTANTLSESADECYENGMDSFVSKPITFQKLKECLEQYLPQRPL 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1621064 1627724 + Cp4.1LG02g05740.1 Cpe02g00308 464257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00308 1003 MobiDBLite consensus disorder prediction 684 698 - -
Cpe02g00308 1003 SUPERFAMILY CheY-like 858 1000 IPR011006 -
Cpe02g00308 1003 MobiDBLite consensus disorder prediction 786 813 - -
Cpe02g00308 1003 CDD REC_hyHK_CKI1_RcsC-like 860 994 - -
Cpe02g00308 1003 ProSiteProfiles Response regulatory domain profile. 859 998 IPR001789 GO:0000160
Cpe02g00308 1003 MobiDBLite consensus disorder prediction 786 851 - -
Cpe02g00308 1003 Pfam Response regulator receiver domain 860 927 IPR001789 GO:0000160
Cpe02g00308 1003 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 999 - -
Cpe02g00308 1003 Gene3D PAS domain 205 335 - -
Cpe02g00308 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cpe02g00308 1003 SMART REC_2 858 994 IPR001789 GO:0000160
Cpe02g00308 1003 Coils Coil 181 208 - -
Cpe02g00308 1003 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cpe02g00308 1003 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cpe02g00308 1003 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cpe02g00308 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cpe02g00308 1003 MobiDBLite consensus disorder prediction 814 841 - -
Cpe02g00308 1003 Coils Coil 92 112 - -
Cpe02g00308 1003 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cpe02g00308 1003 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310|GO:0016772
Cpe02g00308 1003 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cpe02g00308 1003 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cpe02g00308 1003 MobiDBLite consensus disorder prediction 709 728 - -
Cpe02g00308 1003 Coils Coil 342 362 - -
Cpe02g00308 1003 Gene3D - 435 677 IPR036890 -
Cpe02g00308 1003 Gene3D - 336 434 - -
Cpe02g00308 1003 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cpe02g00308 1003 SMART HKATPase_4 482 672 IPR003594 -
Cpe02g00308 1003 Gene3D - 854 998 - -
Cpe02g00308 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cpe02g00308 1003 MobiDBLite consensus disorder prediction 674 698 - -
Cpe02g00308 1003 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cpe02g00308 1003 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 999 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00308 Cpe06g00274 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00308 Cpe-Chr2:1621064 Cpe13g00429 Cpe-Chr13:4620451 1.07E-53 dispersed
Cpe02g00308 Cpe-Chr2:1621064 Cpe06g00274 Cpe-Chr6:1503597 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48994 PF02518 HATPase_c 7.80E-28 CL0025 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00308 - - cmos:111445954 1894.4