Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00325 ATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAACAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCGAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTCGTCGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATCGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACCGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGCCTTTTGACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCTCTCAGGTACCTGATTCCTTCTGTTCCCCGTGTTTCCCGGTATAA 417 48.92 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQVPDSFCSPCFPV 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1719557 1721504 - Cp4.1LG02g05530.1 Cpe02g00325 464274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00325 138 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe02g00325 138 Gene3D - 86 133 IPR012340 -
Cpe02g00325 138 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe02g00325 138 Gene3D - 1 85 IPR014722 -
Cpe02g00325 138 TIGRFAM eIF_5A: translation elongation factor IF5A 17 119 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe02g00325 138 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cpe02g00325 138 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Cpe02g00325 138 MobiDBLite consensus disorder prediction 1 21 - -
Cpe02g00325 138 SUPERFAMILY Nucleic acid-binding proteins 86 131 IPR012340 -
Cpe02g00325 138 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 131 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe02g00325 138 PIRSF Transl_init_eIF5A 1 134 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe02g00325 138 SMART eIF_5a_2 85 135 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00325 Cpe06g00296 CCT
Cpe02g00325 Cpe11g00295 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00325 Cpe-Chr2:1719557 Cpe09g00204 Cpe-Chr9:1182506 2.69E-88 dispersed
Cpe11g00295 Cpe-Chr11:1604386 Cpe02g00325 Cpe-Chr2:1719557 6.75E-86 wgd
Cpe18g00566 Cpe-Chr18:6172488 Cpe02g00325 Cpe-Chr2:1719557 4.02E-26 wgd
Cpe02g00325 Cpe-Chr2:1719557 Cpe04g01252 Cpe-Chr4:10444010 3.99E-72 wgd
Cpe02g00325 Cpe-Chr2:1719557 Cpe06g00296 Cpe-Chr6:1618331 4.25E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00325 K03263 K02180 fve:101296375 265.388