Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00329 ATGGAGGAGGATAGGAATGTTCTGTTTGGTAAATATGAGATCGGGAAGTTGCTTGGGAAGGGAACTTTTGCGAAGGTGTATTATGGAAAAGAGTTGGAATCTGGTGAAAGTGTGGCGATTAAGGTTTTAAACAAGAATCAGGTCAGGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGACTTGTTCGTCATCCGAACATCGTTGAGTTGAGGGAAGTAATGGCGACGAAGACGAAGATCTTCTTTGTAATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTTGCAAGAGGCAGACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCCGTCGATTACTGTCACAGCCGTGGAGTATCTCACCGCGATTTGAAGCCAGAGAATCTGTTGCTGGATGAGAATGGAGATCTCAAGATCTCCGACTTTGGACTCTCCGCCTTGCCAGAACAGCTTCGGAACGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCGTACGTCGCACCGGAAGTACTAAGAAGAAAGGGCTACGACGGGGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTCTGTTAGCAGGATTCCTTCCATTTCAGGATGAAGACATCATAACGATGTTCAAGAAGGTTTTCAAGGCCGAATTCGAGTGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTAATTTCAAAAGTCCTCGTCGTAGATCCAGAAAGACGAATCACAATCGGCGAAATGACGCGAGTTCCTTGGTACCGGAAAAATTTCTCAAGATCGCTCTCATTCACGATGAAGGAAATAATCGCAGAGAAAACAGAGGATTTCGATTCCGATAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTTGAGTTGATATCGTCAATGTCATCCGGATTCGATCTATCTAACTTATTCGAGAACAAAATGAAGGCAGGATCCATGTTCACATCGAGATGCACGGTGCCGACAATCATGGAGAAGATCGAGACGGTGGCGAAGAGACTGAGCTTCAAGGTATCGGAAGTGAAAGATTTCAAACTCCGGCTGCAAGGTCAGACGGAGGGGCGAAAAGGCAAGCTGTCAATGACGGCGGAAGTGTTCGAGATAGCGCCGGAAGTTGCCATAGTGGAATTTTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGTCCGGCTTTGAAAGACATCGTTTGGACGTGGCAAGGCGATTGTGCCGCTAACGTTGACGGACATAACGGCCGATTTGACGGTGACGAACGTTTGTGA 1335 47.57 MEEDRNVLFGKYEIGKLLGKGTFAKVYYGKELESGESVAIKVLNKNQVRKEGMMEQIKREISVMRLVRHPNIVELREVMATKTKIFFVMDYVRGGELFAKVARGRLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDEDIITMFKKVFKAEFECPPWFSAESKRLISKVLVVDPERRITIGEMTRVPWYRKNFSRSLSFTMKEIIAEKTEDFDSDSPKLSTPKFFNAFELISSMSSGFDLSNLFENKMKAGSMFTSRCTVPTIMEKIETVAKRLSFKVSEVKDFKLRLQGQTEGRKGKLSMTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCAANVDGHNGRFDGDERL 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1747908 1749242 - Cp4.1LG02g05380.1 Cpe02g00329 464278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00329 444 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00329 444 Pfam NAF domain 299 356 IPR004041 GO:0007165
Cpe02g00329 444 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cpe02g00329 444 Gene3D Kinase associated domain 1, KA1 297 422 - -
Cpe02g00329 444 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00329 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cpe02g00329 444 PANTHER - 2 433 - -
Cpe02g00329 444 Gene3D Transferase(Phosphotransferase) domain 1 92 273 - -
Cpe02g00329 444 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 2 433 - -
Cpe02g00329 444 Gene3D Phosphorylase Kinase; domain 1 3 91 - -
Cpe02g00329 444 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00329 444 CDD STKc_SnRK3 11 265 - -
Cpe02g00329 444 ProSiteProfiles NAF domain profile. 297 322 IPR018451 GO:0007165
Cpe02g00329 444 SUPERFAMILY Protein kinase-like (PK-like) 8 291 IPR011009 -
Cpe02g00329 444 CDD CIPK_C 303 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00329 Cpe-Chr2:1747908 Cpe03g00911 Cpe-Chr3:5862134 0 dispersed
Cpe08g00496 Cpe-Chr8:3204772 Cpe02g00329 Cpe-Chr2:1747908 7.76E-57 dispersed
Cpe18g00559 Cpe-Chr18:6124703 Cpe02g00329 Cpe-Chr2:1747908 3.01E-165 wgd
Cpe02g00329 Cpe-Chr2:1747908 Cpe04g01247 Cpe-Chr4:10411161 0 wgd
Cpe02g00329 Cpe-Chr2:1747908 Cpe06g00299 Cpe-Chr6:1642721 0 wgd
Cpe02g00329 Cpe-Chr2:1747908 Cpe06g00481 Cpe-Chr6:2833608 4.95E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62203 PF00069 Pkinase 1.40E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00329 - - csv:101213773 806.979