Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00336 ATGACGGTTGAGCCAAGAGTTGATGACCCAAAGGACCAATTTCCGGTTGGAATGCGTGTTCTCGCCGTCGACGACGACCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGCCGGTGCCACTATCATGTCACTACGACGAATCAGGCTATTATGGCACTCAAGTTATTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTGGAGATGGACCTTCCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGGATAACTCATGGAGCATGTGATTACTTGCTGAAGCCTGTTCGCATTGAGGAGCTCAAGAACATTTGGCAGCATGTTATGAGGAGAAAGAAATTTGATCCAAAGGATCAGATGAATTCTATCAATCAGGCCAAGCATGATTATGAGAATGAGGCAGTGCGCAAAAGGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAACGTTGCTAGTCATCTTCAGAAATATAGGCTTTATCTCAGGAGAATCAGCTGTGTAGCAAACCAACAAGCTAACATGGTGACTGCATTGAGCAGCGCCGACCCTTCGTATATGAGAATTGGTTCTCTTAACGGTATCGGGAATTTCCATTCCGTCACAGGACCTCCACCGTTTCCCAACACTGCTTATAGATCTATCCCGACCACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGCATGAATGGCCTTTCTTCCCCGGGAACCGTTCCATTGGAGTCTACATTTCAGCCAAGAACCCGCAGTGCGAATATGTTCCAGGGAATGCCAGAGTCATCAGGACTTGATCAAGTACAACACGTTAAGCACGGCACCCATGTGGACGATCTCGCTCGTGCTTTTGATCAGAGAACAGTGTTTTCTGCTGCTGGTCATTTGAGTAATGACCCCTTGATTTCAGTAGTATCTGCAAGCTTGGAAAGTTCACGTCCTTCGGTAGATAGTATTCGATGCACGGGTGACGATTGGTCGAAGGCTGCTCGTTCATCTAGGATGCTCTTGCATATAGGAAATTGTGTTTCTGACATTGCTTCAATATCTACTCAATCCCATGATTCAAGAACAGATACTCAATGTCAAGCAGCCACGAATAGCAATCGATATGATCGAGTAATCACAAAGGTTCCTGTTCAAGATTGGAATGATCTAGAGGACGCCTATTACGACACGACCGTGGCCTGTAGCTCATCAAATTCATTCGTACCACTGAATGGTGCTGCAGAGACGTTACCAAAGCGTTTCGAAAATCAGAACACAATCTTCTCTAGAAGCAAGGATTTTAACGTGCCTAGTCGAGCAAATGATCTCGATCGTGCAATGGTGGATCACGATCAATTCAAGAAATCGTCTATCGAGACATCGATCATGTTGAAACAAGGAGTTTTGTATGATCATCAGCAAAAAATGCAAGCTAGATTTTGTTCAAGTAACTGTGGTTCCTTGGAAGACATAGCATGTGCAATGATGAAGCAGGAACAAGATGGTGCAAAATTATTGGAAGGAGATTTTGGATGTGATAATTTTCCTATTGGAACGTGCACGTGCTTGTGA 1644 44.46 MTVEPRVDDPKDQFPVGMRVLAVDDDPTCLLILETLLRRCHYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVMRRKKFDPKDQMNSINQAKHDYENEAVRKRILDLMNVEKLTRENVASHLQKYRLYLRRISCVANQQANMVTALSSADPSYMRIGSLNGIGNFHSVTGPPPFPNTAYRSIPTTGMLGRLNTPACMGMNGLSSPGTVPLESTFQPRTRSANMFQGMPESSGLDQVQHVKHGTHVDDLARAFDQRTVFSAAGHLSNDPLISVVSASLESSRPSVDSIRCTGDDWSKAARSSRMLLHIGNCVSDIASISTQSHDSRTDTQCQAATNSNRYDRVITKVPVQDWNDLEDAYYDTTVACSSSNSFVPLNGAAETLPKRFENQNTIFSRSKDFNVPSRANDLDRAMVDHDQFKKSSIETSIMLKQGVLYDHQQKMQARFCSSNCGSLEDIACAMMKQEQDGAKLLEGDFGCDNFPIGTCTCL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1805259 1813673 - Cp4.1LG02g05360.1 Cpe02g00336 464285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00336 547 SUPERFAMILY CheY-like 17 151 IPR011006 -
Cpe02g00336 547 SUPERFAMILY Homeodomain-like 155 191 IPR009057 -
Cpe02g00336 547 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Cpe02g00336 547 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cpe02g00336 547 Gene3D - 135 193 - -
Cpe02g00336 547 Gene3D - 16 134 - -
Cpe02g00336 547 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 154 187 IPR006447 GO:0003677
Cpe02g00336 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 151 - -
Cpe02g00336 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 158 520 - -
Cpe02g00336 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 158 520 IPR045279 GO:0009736
Cpe02g00336 547 PIRSF RR_ARR_type-B 156 545 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe02g00336 547 PIRSF RR_ARR_type-B 1 159 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe02g00336 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 151 IPR045279 GO:0009736
Cpe02g00336 547 CDD REC_typeB_ARR-like 20 133 - -
Cpe02g00336 547 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00336 Cpe-Chr2:1805259 Cpe17g00047 Cpe-Chr17:301283 1.23E-69 dispersed
Cpe18g00551 Cpe-Chr18:6077369 Cpe02g00336 Cpe-Chr2:1805259 1.95E-14 wgd
Cpe02g00336 Cpe-Chr2:1805259 Cpe04g01239 Cpe-Chr4:10362146 6.85E-34 wgd
Cpe02g00336 Cpe-Chr2:1805259 Cpe06g00305 Cpe-Chr6:1686684 1.63E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48997 PF00072 Response_reg 7.70E-23 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00336 - K14491 cpep:111788137 791.186