Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00342 ATGTTCCCAAAACCCCACCATCAACCACCGCCCCATTTCCAGCCCTTTCCCCGCTCCTTCGCCGTCGCGGCCACTCCGCCACCGCGCGATTCTTCCACCGCCGCCGATGACGATTCCACCACCGGCCACTCGCCTCTCACGCACGCTATGCTCCCCAAAGAACCGGCCTCCGGCGGCGACGGAGCTTCTATCGAGGTCGTTCGCCGTCCCCGTGGTCGACCTCCGGGATCCAAGAACAAGCCGAAGCCAGCCGCCGTTGTCGTCGCTGCACGCGACGCCGAGCCGGCGATGAGTCCTTATGTGCTCGAAGTTCCTGGCGGCAGTGATATCGTCGAGGCTATTTCCCGATTCTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTATGGAACCGTCGCCGATGTCACACTCCGGCAGCCGTCCTCATCTCCGGTGGCGACCGTCACTTTCCATGGACGATTCGATATCCTTTCCGTCTGCGCTACTTTTGTTCCTCATACGACGTCGTTTCCAATCCCTAACGGATTCACCATCACGCTAGCAGGGCCGCAGGGCCAGATCTTCGGCGGTTTGGTTGCCGGAGCTTTAATCGGCGCCGGAACCGTCTTTGTAATAGCCGCCTCATTCAACAATCCCTCCTATCAACGGCTTCCATCAGAGGACGAGGTCAGAAAATCAGGCTTCAGCGATGTCGAAGAAGGTCACTCTCCACCGATCTCTGGTGGAAAAGATAGCGAAAACACCAACGCCGCAGCCGATACCTGCGGCCTGCTGCCGATGTACAGTACTCACTCTTCCTCCGACGCAATATGGTCTCGACAACCAGCGGCGCCGTCGCACCATCGCCAGTACTAA 861 59.23 MFPKPHHQPPPHFQPFPRSFAVAATPPPRDSSTAADDDSTTGHSPLTHAMLPKEPASGGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAARDAEPAMSPYVLEVPGGSDIVEAISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVATVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGALIGAGTVFVIAASFNNPSYQRLPSEDEVRKSGFSDVEEGHSPPISGGKDSENTNAAADTCGLLPMYSTHSSSDAIWSRQPAAPSHHRQY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1843698 1844558 + Cp4.1LG02g05220.1 Cpe02g00342 464291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00342 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 280 IPR014476 GO:0003680
Cpe02g00342 286 Gene3D - 98 233 - -
Cpe02g00342 286 MobiDBLite consensus disorder prediction 1 84 - -
Cpe02g00342 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 28 280 - -
Cpe02g00342 286 MobiDBLite consensus disorder prediction 218 253 - -
Cpe02g00342 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Cpe02g00342 286 MobiDBLite consensus disorder prediction 1 16 - -
Cpe02g00342 286 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cpe02g00342 286 MobiDBLite consensus disorder prediction 32 46 - -
Cpe02g00342 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cpe02g00342 286 CDD DUF296 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00342 Cpe-Chr2:1843698 Cpe11g00483 Cpe-Chr11:2791560 9.58E-88 dispersed
Cpe02g00342 Cpe-Chr2:1843698 Cpe06g00453 Cpe-Chr6:2640759 9.96E-172 wgd
Cpe02g00342 Cpe-Chr2:1843698 Cpe07g00165 Cpe-Chr7:981737 2.20E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00342 - - jre:109013700 289.271