Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00368 ATGGCTTCCATTTCTCTCCTCCTCCTCCTCTTCTTCTCTTCTTCAATTCACTCTCTCTCCGCCGCCGCCGCCACCGCCAGAAACCTTGCTTTCTTAGACCATCCCCTGGATCTCGACTCCTTTCCCTTTGAATACCACGGCGGCCGACTTCTCTCCGGCAATATAACCATCAATCTCATATGGTACGGCAATTTCAATCCCTCCCAAAAAGCCATCGTCGGCGATTTTATCGCCTCCCTCTCTGCTTCCAAATCGGCGATTTCCCGGCAGCCCTCTGTTTCCACTTGGTGGACTGCCATTAACAAATACTATAATCTTGCTCGGAGTTTAAAGAAATCCTCCCGTTTTTCTATCTCCTTGGGTTCTCAGATTCATGACCGGAAATATTCCCTTGGGAAATCGCTAACGAAGCGTCATGTTCTTGCTCTGGCAGCGAAGGGTCGGCGGAAATATGCAATCAATGTGGTTTTAACGGCTGCGGATGTCGCCGTCGATGGATTCTGTTTTAACAAATGTGGGTCACATGGGGTTTCCGCCGGAGCTCCGATTCAGGGGAAGCGGTATAAGTTTGGGTATATTTGGGTGGGGAATTCGGCGACTCAATGTCCGGGGCAATGTGCCTGGCCGTTTCATCGTCCGGTGTACGGACCACAGAATCCGCCGTTGGTGTCGCCGAATAAGGATGTGGGAATGGACGGTGTTATAATAAACTTGGCCGGACTTCTCGCCGGAACTGCGACGAATCCGTTTGGGGATGGGTTTTATCAGGGGACGAAGGAAGCTCCGTTGGAGGCGGCGTCGGCCTGCACCGGAATATTCGGTAAAGGTGCTTTTCCGGGATATCCCGGGGAGGTTCTGGTGGATGCTGGCAGCGGAGGGAGTTATAATGCGGTCAGTGGCAATGGACGGAAGTTTCTGCTTCCGGCGTTGGTTGATCCGATCACTTCCGTTTGTTCTACTCTGGTTTGA 969 52.12 MASISLLLLLFFSSSIHSLSAAAATARNLAFLDHPLDLDSFPFEYHGGRLLSGNITINLIWYGNFNPSQKAIVGDFIASLSASKSAISRQPSVSTWWTAINKYYNLARSLKKSSRFSISLGSQIHDRKYSLGKSLTKRHVLALAAKGRRKYAINVVLTAADVAVDGFCFNKCGSHGVSAGAPIQGKRYKFGYIWVGNSATQCPGQCAWPFHRPVYGPQNPPLVSPNKDVGMDGVIINLAGLLAGTATNPFGDGFYQGTKEAPLEAASACTGIFGKGAFPGYPGEVLVDAGSGGSYNAVSGNGRKFLLPALVDPITSVCSTLV 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2022338 2023306 - Cp4.1LG02g05090.1 Cpe02g00368 464317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00368 322 Pfam Phosphate-induced protein 1 conserved region 44 321 IPR006766 -
Cpe02g00368 322 PANTHER PROTEIN EXORDIUM-LIKE 5 5 322 IPR006766 -
Cpe02g00368 322 PANTHER PROTEIN EXORDIUM-RELATED 5 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00368 - - - cmax:111480871 590.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00368 Cpe-Chr2:2022338 Cpe07g00139 Cpe-Chr7:785372 1.09E-131 dispersed
Cpe15g00286 Cpe-Chr15:3267097 Cpe02g00368 Cpe-Chr2:2022338 4.94E-62 dispersed
Cpe11g00443 Cpe-Chr11:2507835 Cpe02g00368 Cpe-Chr2:2022338 8.64E-136 wgd
Cpe02g00368 Cpe-Chr2:2022338 Cpe07g00138 Cpe-Chr7:780195 1.56E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g432 . . . . . . . Bma01g02608 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1328 Cone7ag1269 . . Lsi04g02243 . . Cme03g01857 . Blo18g00130 . Bda13g01397 . . . Bma02g00137 . . . Cma12g00164 . . . . Cpe02g00368 Bhi09g02446 Tan01g3798 Cmetu04g0771 . Hepe01g2135 Mch11g0673 . . . . . . . . . . Chy03g01359 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00368 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.085285 0.0