Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00374 ATGTCAGGTGGCGGTTGCAGCATAGTTTGGTTCAGAAGAGATCTCAGGGTTGAAGATAACCCAGCTCTCACCGCCGCCGTCAGGGCCGGCGCCGTCGTCGCCGTCTTCATCTGGGCGCCGGAGGAAGAAGGTCACTACTATCCTGGCCGAGTCTCGCGGTGGTGGCTCAAACAGAGCTTAGCGCATCTCGATTCTTCGCTTAGAAGCCTCGGCGCTTATCTTCTCACTAAGAGATCCACCAACACCATTTCTACTTTGCTCGATGTTGTTAAAGCCACCGGCGCTTCTCAGCTCTTCTTCAATCATTTATACGATCCTTTGTCGCTTATTCGTGATCATCGAGCAAAGGAGGTTTTATCTGCGCAAGGCATCGGCGTGAGGTCTTACAATGCCGATTTGCTGTACGAGCCGTGGGACGTTAAGGATGTCGATGGCAATCCGTTTACGACGTTTGCCGGGTTCTGGGAAAGATGTCTCAGCATGCCTTGTGATCCAGAGGCACCTCTTCTCCCACCTAAGAGAATCATTTCAGGTGATGCATCGAGGTGCCCAAGCGACACGTTGGTATTTGAAGACGAATTGGAGAAGGGAAGCAACGCACTTCTCGCCCGAGCATGGTCTCCTGGATGGAGCAATGCAGATAAGGCTTTGACCACATTCATTAACGGACCGTTGATCGAGTACTCAAAAAACCGTAGGAAGGCGGATAGTGCAACCACCTCGTTTCTGTCTCCTCACTTGCATTTCGGGGAGGTAAGCGTGCGAAAAGTGTTTCATCTCGTTCGAATGAAGCAGGTTTTATGGGCGAATGAAGGAAACGAGGTCGGTGAAGAGAGTGTCAACTTGTTTCTCAAATCTATTGGGCTCAGAGAATACTCAAGATATATGAGTTTCAACCATCCGTACAGCCATGAAAGGCCACTTCTTGGACACCTTAAATTCTTCCCTTGGGTTGTGGATGAAGGCTATTTTAAGGCATGGAGGCAAGGAAGAACCGGTTATCCATTAGTCGATGCTGGTATGAGGGAATTGTGGGCGACCGGGTGGCTGCACGATCGGATCCGAGTCGTCGTTTCTAGCTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGATGGGGAATGAAGTATTTCTGGGATACGCTCTTGGATGCAGATCTCGAGAGCGATGCTCTTGGTTGGCAATACATATCTGGCACACTTCCCGACAGTCGGGAATTTGATCGTATTGACAATCCACAGCTCGAGGGTTATAAGTTCGATCCGTACGGAGAATACGTCCGGAGATGGCTTCCTGAACTTTCTAGATTACCAACTGAATGGATCCATCATCCATGGAATGCACCAGAGTCTGTACTCCAAGCTGCTGGGATCGAGCTTGGATCGAACTACCCTCTTCCCATCGTAGGATTGGATGCAGCTAAGGCTCGGCTGGAAGAAGCGCTGTCGGAGATGTGGCAACAAGAAGCAGCTTCAAGAGCTGTGATCGAGAATGGAACTGAAGAGGGACTCGGAGACTCATCCGAGTCGATCCCAATTGCATTTCCTCAGGACATAGCCATGGAGGATGAAGACCTTGAGCCTGCTAGGATGAATGCTCATACAATTCGGTGCTTCGAGGATCAGATGGTCCCGAGCATGACGAGTTCGGTGAGGTTAGAAGACGACCATTCTTTGAATTCTATGAACATTCGAAGTACAGCAGAAGATGGTAGAGCAGAAGTACCAACAGATCTAAATCTAAACCAAGAGCCAACCAGAGACGCAAATCGAAGAGCTCAACCGACTGCTCCGATGAACGCTCAACTTCCATATACTGCAGGTATAGGCTTAAGAAGTGGTGCTGAAGACTCCACTGCAGAGTCTTTTTCGAGTAGTGACGGTCGAAGAGAAAGAGACGGAGGTGTGGTTCCGGTTTGGTCTCCACCGAGTTCGAGTTACGGCGAGCAGTTTGTGGTCGACGAAAATGGCATTGGAACAAGCTCTTCGTTCTTGCAGGGACATCAACAGACTCATCAAATAATCAATTGGAGGCGGCTATCTCAAACCGGGTAA 2052 49.66 MSGGGCSIVWFRRDLRVEDNPALTAAVRAGAVVAVFIWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGAYLLTKRSTNTISTLLDVVKATGASQLFFNHLYDPLSLIRDHRAKEVLSAQGIGVRSYNADLLYEPWDVKDVDGNPFTTFAGFWERCLSMPCDPEAPLLPPKRIISGDASRCPSDTLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRMKQVLWANEGNEVGEESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDAAKARLEEALSEMWQQEAASRAVIENGTEEGLGDSSESIPIAFPQDIAMEDEDLEPARMNAHTIRCFEDQMVPSMTSSVRLEDDHSLNSMNIRSTAEDGRAEVPTDLNLNQEPTRDANRRAQPTAPMNAQLPYTAGIGLRSGAEDSTAESFSSSDGRRERDGGVVPVWSPPSSSYGEQFVVDENGIGTSSSFLQGHQQTHQIINWRRLSQTG 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2062339 2066177 - Cp4.1LG02g04890.1 Cpe02g00374 464323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00374 683 PRINTS DNA photolyase signature 332 348 IPR002081 -
Cpe02g00374 683 PRINTS DNA photolyase signature 352 370 IPR002081 -
Cpe02g00374 683 PRINTS DNA photolyase signature 391 405 IPR002081 -
Cpe02g00374 683 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Cpe02g00374 683 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Cpe02g00374 683 MobiDBLite consensus disorder prediction 564 647 - -
Cpe02g00374 683 Coils Coil 679 683 - -
Cpe02g00374 683 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Cpe02g00374 683 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Cpe02g00374 683 MobiDBLite consensus disorder prediction 578 600 - -
Cpe02g00374 683 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 482 IPR014134 GO:0009785|GO:0009882
Cpe02g00374 683 Gene3D - 134 293 - -
Cpe02g00374 683 Pfam DNA photolyase 7 161 IPR006050 -
Cpe02g00374 683 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Cpe02g00374 683 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Cpe02g00374 683 Coils Coil 470 490 - -
Cpe02g00374 683 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Cpe02g00374 683 PANTHER CRYPTOCHROME 1 605 IPR002081 -
Cpe02g00374 683 Gene3D HUPs 8 206 IPR014729 -
Cpe02g00374 683 Pfam Blue/Ultraviolet sensing protein C terminal 511 625 IPR020978 -
Cpe02g00374 683 PANTHER CRYPTOCHROME-1 1 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00374 K12118 CRY1; cryptochrome 1 - csv:101213649 1283.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00374 Cpe06g00379 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00374 Cpe-Chr2:2062339 Cpe12g00142 Cpe-Chr12:910538 0 dispersed
Cpe02g00374 Cpe-Chr2:2062339 Cpe06g00423 Cpe-Chr6:2417549 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
Vvi18g409 . Blo12g00706 . . Bpe02g00107 Bpe04g00446 . . . . Cma01g01604 Cma09g00509 Car01g01224 . . Cpe06g00379 . . . . . . . . . . . . . . . Cone4ag1336 Cone7ag1593 . . Lsi04g02232 Csa03g04443 Chy04g00257 . . . Bda11g00766 . . . . . . Cmo01g01651 Cmo09g00506 . . . Car09g00443 . Cpe02g00374 Bhi09g02431 . . . . . . Cla11g01379 Cam11g1436 Cec11g1464 Cco11g1460 Clacu11g1595 Cmu11g1414 Cre11g1834 . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005916 1 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00374 Cpe_Chr02 FPKM 9.382315 11.565763 21.731968 22.818977 23.149929 25.501669 23.998798 21.827503 19.347265 19.458019