Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00384 ATGGTAGAAACAGAACAAGAGGAGAAAGTTGAATTTCAATGGGGCAAAAGGAAAGGAATTGGTGGGAAGAAGAAGGACGTGTCCTTTTATGAATCTTTTACTTATGATGGTGTAGAATATTTTCTATATGACTCTGTTTACCTATACAAGGAGGGTGAACCAGAACCTTATATTGGCAAGATTCTTAAAATCTGGCAGAATCCAGATAAGACGAAGAAAGTAAAAATTCTTTGGTTTTTTCGACCTTGTGAGATTCTTAATTATCTTGGAGCCGAAGACACGAGGGACAATGAATTATTTTTGGCATCCGGTGATGGTGTTGGCCTTGCCAATGTTAATTCTCTGGAAGTAATTGCTGGAAAGTGCAGCGTTCTCTGTTCTTCAAATGATAGCAGAAATCCACAACCTTCAGATGAAGCACTCAAAAAGGCTGATTTTGTATTTTGTCGTACATTTGATGTTGGAAAACTAGAGGTCTGCAATGAGATATGTGAAAAAATTGCTGGAGTAGAAGTTAAATTTTTACTCAATAAAGTAGATACTTCAAAAGATGTTAAGAGGACCGAGAAGGATGGGAAGGATGCAATTGTAAATACTGAATCAGAAGATCTTTTTGAAAGGAACACTTCTAATGGAGAATCAACTTTGAAGACTAATGACAGCACTGTCGAGATGTCCACCAAGGAAAATGTTGATTTGAAGGCTTCTCTATCTATAGAGAAATCCTCCAATGAAGAGAAGTCTGGTGTATGCGTGAGTAATGGAGGAAACGGAATGGCTAATATTAGTAGCAAACACAAAAACATCTTAGATGATAAGGTCTCTTCGAAGCTTAAAATTGATTACAATAATAAACCCAGTAAAGATGCGCTACCTAAGGATGTTGAAGGTAGAGTTAAAAGTCCGAGGGACTCCTCTGAAATTGAACATAGACCAGCGAAGAAGGCAAAGCTAGATAGTTTTGTTCAATTATCTCTGGGAAAGACCAAAAATGACATTCAAAAGCCTGGCCTCAATCGCAGTAATGGTGATACGCTGGCTTCCTCACCCAAGATTCATGTTTCTGAAGATGCTTCCAGGACCAAAAATGTAAAAGATTCTCATGGAACAAAAGACAGCATTATCAAGAAGCCCAAACTAGATGAGAAGCCAACAAAGGTTTCTATTGGCAAGAACTTAAAGCCTTCAGTTGCAGACTGCAAAATAGATGGTCAAATTGTGGAAGTTACTAGAAGGCCAGACGCTGATAGAAGCAGATGGTTCAAGGGACTTCCGTGGGAAGAAAGAATGAAGAATGCGCATGAGCAAGGAACACTTGTCCTAATTCAGAATTTTGATCCTGCTTACACTTCAGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAACGAGAGTTGCACTGCTAAGATGATTCAGCGTACTGCAAATTCTATGCCTCACATAGGTCAAGCTTATGTTGTATTTAAAACTAAGGAAGCAGCAGAGAAAGTGGTTAGAAAACTAGATGAAGGTTGCTTATTACTTGCTAATGGGAATGCTCTTGTTGGTAGCTTTGCAACTCCTCATCTCCAGTTAAAGAAACAAACGTATTTTGGGCATCACAGTATTGATAAGCTAAGGCATCTAATGCAACGTGAGATGAAAGAAGCTGTATCAACCTCGCATTGTTCTCAGCCGAATACGGTAGAATATGATATGGCCATGGAATGGTGTTTACTGCAAGAAAGATCAGAACTCACCTGGAAAAAGTTATTCAAGGTCGATTTCGTTCTATTGAACTTAAATGGTGCAATGTTATCTTTAGAGATGAGAGGAAGTCGGTTAGACGAGGGTCCTAGCTTTTGGAGGAACTTGATAAGATGA 1863 39.02 MVETEQEEKVEFQWGKRKGIGGKKKDVSFYESFTYDGVEYFLYDSVYLYKEGEPEPYIGKILKIWQNPDKTKKVKILWFFRPCEILNYLGAEDTRDNELFLASGDGVGLANVNSLEVIAGKCSVLCSSNDSRNPQPSDEALKKADFVFCRTFDVGKLEVCNEICEKIAGVEVKFLLNKVDTSKDVKRTEKDGKDAIVNTESEDLFERNTSNGESTLKTNDSTVEMSTKENVDLKASLSIEKSSNEEKSGVCVSNGGNGMANISSKHKNILDDKVSSKLKIDYNNKPSKDALPKDVEGRVKSPRDSSEIEHRPAKKAKLDSFVQLSLGKTKNDIQKPGLNRSNGDTLASSPKIHVSEDASRTKNVKDSHGTKDSIIKKPKLDEKPTKVSIGKNLKPSVADCKIDGQIVEVTRRPDADRSRWFKGLPWEERMKNAHEQGTLVLIQNFDPAYTSGEVEDIVWHAFNESCTAKMIQRTANSMPHIGQAYVVFKTKEAAEKVVRKLDEGCLLLANGNALVGSFATPHLQLKKQTYFGHHSIDKLRHLMQREMKEAVSTSHCSQPNTVEYDMAMEWCLLQERSELTWKKLFKVDFVLLNLNGAMLSLEMRGSRLDEGPSFWRNLIR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2116826 2125029 + Cp4.1LG02g04990.1 Cpe02g00384 464333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00384 620 MobiDBLite consensus disorder prediction 280 315 - -
Cpe02g00384 620 CDD RRM_SF 440 502 - -
Cpe02g00384 620 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682
Cpe02g00384 620 SMART BAH_4 38 161 IPR001025 GO:0003682
Cpe02g00384 620 Gene3D - 7 162 IPR043151 -
Cpe02g00384 620 Gene3D - 425 529 IPR012677 -
Cpe02g00384 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 438 521 IPR000504 GO:0003723
Cpe02g00384 620 Pfam BAH domain 44 128 IPR001025 GO:0003682
Cpe02g00384 620 SUPERFAMILY RNA-binding domain, RBD 429 515 IPR035979 GO:0003676
Cpe02g00384 620 PANTHER PROTEIN ANTI-SILENCING 1 1 587 - -
Cpe02g00384 620 MobiDBLite consensus disorder prediction 355 376 - -
Cpe02g00384 620 PANTHER PROTEIN ANTI-SILENCING 1 1 587 - -
Cpe02g00384 620 MobiDBLite consensus disorder prediction 328 376 - -
Cpe02g00384 620 MobiDBLite consensus disorder prediction 328 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00384 - - - csv:101208860 926.391
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00384 Cpe06g00414 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00384 Cpe-Chr2:2116826 Cpe06g00414 Cpe-Chr6:2362533 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00384 Cpe_Chr02 FPKM 1.171286 1.025128 0.227466 0.269621 0.0 0.0 0.32315 3.829091 4.30968 3.302398