Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00386 ATGGCATGGGGCAGCATATACAGAAGAAGAATGAGAGTGTTCACCCTGGCTTTAGTGATATACCTGGATTATAAGGCATTAGAACAAAGAGAGAAGTGGATTAGCAAGTCTAAAAGATCAGCCTTATGGGAAAAGGCACATGAACGTAATGCAAAGCGCTCGTTGAGTTTGATTATAGAGTTGGAAGGTTTGTGGGTGAAATTTGGACAGTATTTATCTACTCGAGCAGATGTTATACCTGATGCCTACATACGCCTCCTCAAACAGTTACAGGACTCTCTTCCTCCTCGTCCTTTACAAGAGGTTCGTCAGACCATACAGAAAGAGTTGGGGAAACCAATCAGTGATTTGTTTACAAACTTTGTGGAAGCGCCCTTAGCAACTGCATCTATAGCCCAAGTGCACCGAGCAACGTTGCTTGATGGAAGGGAGGTGGTTATCAAAGTGCAACACGAGGGCGTAAAGGCAGTTATATTAGAGGACCTGAAGAATGCAAAGGCGGTTGTTGATTGGATAGGCTGGGCAGAGCCGCAGTATGACTTTAATCCCATTATAGATGAATGGTGCCGAGAAGCTCCCAAAGAACTTGATTTCAATCTTGAAGCTGAGAACACCAGGACAGTATCTAGAAATCTTGGCTGCACAAACGAATCGGATGGCAATGAAGTCCTCGGGACTGTGAATGTTTCTATACCGGAAGTTATTCAGTCAACAGAGAAAGTTCTAATTTTAGAGTATATGGACGGTATACGCTTAAATGACGCTGCTGACCTGGAAGCTTATGGTATTGACAAACACAAAATTGTTGAAGAAATCACACGAGCTTATGCACACCAAATTTATGTTGATGGATTTTTCAATGGCGACCCTCATCCTGGGAATTTTCTCATCAGCAAGGAGCCTCCTCATCGTCCAATTTTGCTCGACTTTGGGCTTACAAAGAAATTACCTTGCACCATGAAACTAGCTCTGGCAAAGATGTTTTTAGCAGCTGCAGAGTATGAGTTTACTATTGTTACTGTAAGACAGCTAATGGGTGACCACGTTGCTCTTCTATCTTCCTTCGCTGAAATGGGACTTAAGTTGCATCTTGATGTGCCAGAGCAAGCAATGGCGGTGACAAATGTATTCTTTCGAGCAGCAACTGCTGCAAAAGAATCACATGAAACCTTCAAAGCTGCGGCAGAGCAAAGATCGAAGAATCTGAAGGAAATACAAGAAAAAATGAAATTAAATCATAAGGAGGCTAAACGTTTTAATCCTGTTGATGCATTTCCTAGTGATATTATAATATTTGCACGGGTCCTTAATCTTCTAAGAGGTCTTTCCTCCTTGATGGATGTTCGCACAGTATATCTAGATATCATGAGACCGTTTGCTGAATATGTTCTACAAGCAAGCATTAGCAAGGAGCCAAATGTGTGTGCCTACAAAGATGGAGAGGTCATTATTGATACTGCTGCTGGAGTTATGGGTAAATATGATCCTCGTCCAGTTCAACCTGACACTCTTTTTCCAGTGTTCTCTGTGACAAAGGGCATCACAGCTGGAATGTTGCATTGGCTAGTTGATAATGGGAAACTGAAGTTTGAGGAAAATATTGCTAATATTTGGCCGGAATTTGGATCAAATGGTAAAGATATAATAAAGGTCTATCAAGTGCTTAACCACACTTCAGGTCTGCATAATGCCACGGTCAATGTTAGGGAAAATCCTTCGCTAATTTGTGACTGGGACGAATGTTTGAATTGCATGGCTAAATCAGTGCCAGAGACTGAACCTGGCCAGGAGCAGGTGTATCACTATCTATCCTATGGGTGGCTATGTGGTGGAATCATTGAGCACGCAACGGGGAAGAAATTCCAAGAGATTCTTGAAGAAGCATTAGTTAACCCGCTCCATATACAAGGCGAGCTATACATCGGAATCCCTCCCGGAGTTGAATCTCGTCTTGCAACACTAACACCAGATCTTAATGATCTACAAAATATCTCTGGGATCGATCCTTCTGAATTGCCCTCCACCTTCCAGCCAACCATGATTGCGCAGCTTGCCAGTACTCTCGCACCTCTATTTAATATGCTCAATACTCGCCGTGCCGTTATACCTGCTGCCAATGGACATTGCTCGGCCCGCGCACTGGCACGTTATTATGCAGCATTGGCTGGTGGCGGTGTGATACCACCACCGCATTCCTCAGCCTCCCAACCAGCTCTTGGAAGCCACCCTCACATCCCTAAATTTCCCTCCGAGAATTCAAAGAAGCAAAAAGCTTCCAGAACTAAGGACATTCATGCCAACTTAAATAATGACCATCAAAAGAACTTGAATTCTACTGAAACCGACGCCAATGGTGGTCTCTTCAGGAATACAAGCAATACTGGTTATACTAGGCTCCTTGATAACAGCAGCAGTAGCAATGCCAATGATCCCAGCACAAGAGCCGACTCGAGGCATGGAACCACTGCAAAAAAGTTCGTAGGAAAAATGTTCAAAGACCCTAGAATTCATGATGCCTTTTTGGGTATAGGCAAATATGAGAATTTCGCCATTCCAAATGGGAAGTTTGGATTAGGATTCTCAAGGTTGAGATCAGATGAAGGTTCTTTTATTGGTTTTGGCCATTCAGGAATGGGCGGATCCACAGGTTTTTGTAATATTGATCACAATTTTGCCATCTCCGTGAACCTCAACAAAATGTCTCTCGGGGGTGTTACTGCCAGCATAGTTCAGTTCGTTTGTTCCGAGCTGAATATCCCGTTACCAGCCGAATTTTCCCCGCTCGTGGTGGCCACTCCTTTGATTAACTGA 2811 43.51 MAWGSIYRRRMRVFTLALVIYLDYKALEQREKWISKSKRSALWEKAHERNAKRSLSLIIELEGLWVKFGQYLSTRADVIPDAYIRLLKQLQDSLPPRPLQEVRQTIQKELGKPISDLFTNFVEAPLATASIAQVHRATLLDGREVVIKVQHEGVKAVILEDLKNAKAVVDWIGWAEPQYDFNPIIDEWCREAPKELDFNLEAENTRTVSRNLGCTNESDGNEVLGTVNVSIPEVIQSTEKVLILEYMDGIRLNDAADLEAYGIDKHKIVEEITRAYAHQIYVDGFFNGDPHPGNFLISKEPPHRPILLDFGLTKKLPCTMKLALAKMFLAAAEYEFTIVTVRQLMGDHVALLSSFAEMGLKLHLDVPEQAMAVTNVFFRAATAAKESHETFKAAAEQRSKNLKEIQEKMKLNHKEAKRFNPVDAFPSDIIIFARVLNLLRGLSSLMDVRTVYLDIMRPFAEYVLQASISKEPNVCAYKDGEVIIDTAAGVMGKYDPRPVQPDTLFPVFSVTKGITAGMLHWLVDNGKLKFEENIANIWPEFGSNGKDIIKVYQVLNHTSGLHNATVNVRENPSLICDWDECLNCMAKSVPETEPGQEQVYHYLSYGWLCGGIIEHATGKKFQEILEEALVNPLHIQGELYIGIPPGVESRLATLTPDLNDLQNISGIDPSELPSTFQPTMIAQLASTLAPLFNMLNTRRAVIPAANGHCSARALARYYAALAGGGVIPPPHSSASQPALGSHPHIPKFPSENSKKQKASRTKDIHANLNNDHQKNLNSTETDANGGLFRNTSNTGYTRLLDNSSSSNANDPSTRADSRHGTTAKKFVGKMFKDPRIHDAFLGIGKYENFAIPNGKFGLGFSRLRSDEGSFIGFGHSGMGGSTGFCNIDHNFAISVNLNKMSLGGVTASIVQFVCSELNIPLPAEFSPLVVATPLIN 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2132726 2140208 + Cp4.1LG02g05000.1 Cpe02g00386 464335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00386 936 Pfam Beta-lactamase 474 741 IPR001466 -
Cpe02g00386 936 MobiDBLite consensus disorder prediction 748 769 - -
Cpe02g00386 936 SUPERFAMILY Protein kinase-like (PK-like) 91 328 IPR011009 -
Cpe02g00386 936 PANTHER ABC1 FAMILY PROTEIN 1 473 - -
Cpe02g00386 936 Gene3D - 454 762 IPR012338 -
Cpe02g00386 936 MobiDBLite consensus disorder prediction 729 821 - -
Cpe02g00386 936 CDD ABC1_ADCK3-like 89 340 - -
Cpe02g00386 936 PANTHER ABC1 FAMILY PROTEIN 1 473 - -
Cpe02g00386 936 Pfam ABC1 atypical kinase-like domain 89 335 IPR004147 -
Cpe02g00386 936 PANTHER ABC1 FAMILY PROTEIN 470 926 - -
Cpe02g00386 936 PANTHER ABC1 FAMILY PROTEIN 470 926 - -
Cpe02g00386 936 SUPERFAMILY beta-lactamase/transpeptidase-like 474 906 IPR012338 -
Cpe02g00386 936 Coils Coil 392 412 - -
Cpe02g00386 936 MobiDBLite consensus disorder prediction 770 816 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00386 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101216220 1535.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00386 Cpe-Chr2:2132726 Cpe10g00587 Cpe-Chr10:3438666 6.15E-44 dispersed
Cpe02g00386 Cpe-Chr2:2132726 Cpe06g00411 Cpe-Chr6:2340836 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008509 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00386 Cpe_Chr02 FPKM 22.425034 18.667255 45.262646 44.003071 1.925183 2.919653 2.317204 14.639118 15.122995 15.033107