Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00392 ATGAAGGAGGAGGACGGCAAACGTGGAACGGAGGTTTCAGGTTCTCGTCGGACGCGGTCTCGTATAGCGCCGGATTGGACAGCGGCGGATTGCCTCGTTCTTGTTAATGTGATTGCAGCTGTGGAGGCGGATTGTTGGAAAGCTTTGTCTAGCTTTCAGAAATGGAAAATTGTTGCAGAGAATTGCACGTCTTTGGATGTGGCTCGGAACTCGAATCAGTGCAGGAGGAAGTGGGACTGTTTGCTGATTGAACATGATGTTATCAGGCAATGGGAGTTAGAGATGCCGGATGATGATTCGTATTGGTGTTTGGAAAGTGAAAGGAGAAAGGAATTGGGACTTCCTGATAACTTTGACGAGGAGCTGTTCAAAGCAATCGATAATGTTGTATCGATGAGGGCGAATCAGTCGGATACGGAGCCTGATAGCGATCCTGAGGCTGCGGTTGAGAAGGTAGATGAAGCTGCAGAGCCTGGCCCTAAAAGGCAAAGACGTTGTTCAATGTCCACAAGAAATCAAGCTCTTGAGAAATCTGTAAAATGTGAGGGAGAAGAAGAAGAAGAACCTCCGGTGAGCTCTCCGGAAGTAGAGCGTCGTGGATGCTACATCAAAAGCCATGGAGAAAAGACGACCGATAGCACCGAACCCGAAGAGCAAACGATGGCGAAGAAATTGCTTGAAACTGCAGAAAAAGTTCAAGCAATTGTGTCTGAGAATGCAGAATATGCAACGTCGGACGAAAAAAACGACAACGACAACTACAACGTCCGAACTAATTCCATTAGGCGTCAAGGGAGCAAGCTTATCAAATGTCTTGAAGATTTTCTCAACACCATTAATGATCTCCATAGCCTGCTCGAAGATCAAGAGTAA 873 46.62 MKEEDGKRGTEVSGSRRTRSRIAPDWTAADCLVLVNVIAAVEADCWKALSSFQKWKIVAENCTSLDVARNSNQCRRKWDCLLIEHDVIRQWELEMPDDDSYWCLESERRKELGLPDNFDEELFKAIDNVVSMRANQSDTEPDSDPEAAVEKVDEAAEPGPKRQRRCSMSTRNQALEKSVKCEGEEEEEPPVSSPEVERRGCYIKSHGEKTTDSTEPEEQTMAKKLLETAEKVQAIVSENAEYATSDEKNDNDNYNVRTNSIRRQGSKLIKCLEDFLNTINDLHSLLEDQE 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2176128 2179140 + Cp4.1LG02g04810.1 Cpe02g00392 464341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00392 290 MobiDBLite consensus disorder prediction 144 161 - -
Cpe02g00392 290 PANTHER OSJNBA0043A12.37 PROTEIN-RELATED 7 288 - -
Cpe02g00392 290 MobiDBLite consensus disorder prediction 133 217 - -
Cpe02g00392 290 PANTHER OS02G0174300 PROTEIN 7 288 - -
Cpe02g00392 290 Gene3D - 26 84 - -
Cpe02g00392 290 MobiDBLite consensus disorder prediction 199 217 - -
Cpe02g00392 290 ProSiteProfiles Myb-like domain profile. 26 82 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00392 - - - csv:101210084 408.297
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00392 Cpe-Chr2:2176128 Cpe06g00404 Cpe-Chr6:2299831 1.47E-153 dispersed
Cpe02g00392 Cpe-Chr2:2176128 Cpe06g00403 Cpe-Chr6:2290964 1.47E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g242 . . . . . . . . . . Cma01g01586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01634 . Cma09g00540 . . . . Cpe02g00392 . . . . . . . . . . . . . . . . . Cme04g00318
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003929 0 2 0 0 0 1 2 1 2 1 1 1 2 2 2 2 1 1 3 1 2 2 1 2 2 2 2 2 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00392 Cpe_Chr02 FPKM 3.908982 3.859184 15.333846 15.008561 7.4488 5.569583 6.032049 27.128527 28.5683 26.198452
Cpe02g00392 Cpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0