Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00396 ATGTTGGGAGTCCGATCTAAAATCGTCGGACATTTAACACACTACTCCGTTGTTTCCGAAAACCCAAGTGTTACTTGGCAAAAAATGTCTCGTGTGTACGTTGGGAATTTGGACCCGAGGGTCTCTGAGCGCGAGCTGGAAGACGAATTTCGTGTATTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGATTTTGATGATCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGGAAGAATGGTTGGAGAGTTGAGCTTTCTCACAATTCTAGAGGTGGTGGTGGAGGTGGCCGAGGAGGGGGTCGTGGTCGTTCTGGGGGTTCTGATCTCAAATGCTATGAATGTGGTGAGCCAGGACATTTTGCTCGTGAATGTCGTTCACGTGGCGGCGGCGGGGGTGGTGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCACGGTACCGTCGGAGTCCAAGGAAGAATGGTTGGAGAGTTGAGCTTTCTCACAATTCTAGAGGTGGTGGTGGAGGTGGCCGAGGAGGGGGTCGTGGTCGTTCTGGGGGTTCTGATCTCAAATGCTATGAATGTGGTGAGCCAGGACATTTTGCTCGTGAATGTCGTTCACGTGGCGGCGGCGGGGGTGGTGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCACGGTACCGTCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGGCGTAGCTATAGCAGATCACCTCCGTATCGTGGTAGAGAGGAGGAATGGTGTAAAGGACCGCCGTCGGAGCAGGAGCTGAGGACTACAGACTTCTCAATCTGCCTTAGCATGAGGAACGGCATCAAATGCTTCTGGCAGGCTGGACCAGTTGAGTTTATAGCGGATTCGAAGCTGATGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGTAAGAGGCGTTTTGAGTTCGCATTACCAGTTTTCAAAATGGGGACTGCTCCATTAACGAATGCGGTTGGGGATAAAGGTAAAATTAGTTCAGATTTAGGGAGATTCAAGATTTTTGTGGAGAATAATGAGGCACAACAGAAGTGGATTCTTAACCCTGAAAGTGAAACGATTCTGAGATGGAATAGGGTTTTTCTGTTCTCTTGTTTGACAGCTCTTTTCGTTGATCCTCTTTTCTTCTACCTTCCTTCAGTGATTCACCATAATAGATCGTCTTGTATGACTACTGATTTCAATTTGGGAATTGCTGTGACTGTTTTTCGCACTTTTGCCGATGTGTTCTATCTTTTTCATATGGTTTTGAAGTTCCGGATGGCTTATGTTTCACCTACTTCGAGAGTTTTTGGGAAGGGTGAACTTGTTACTGATCCAAAGAAGATTGCTAAACGTTACTTGAAGTCTGATTTCTGTATAGATCTGATTGCTTCTCTGCCTCTTCCTCAGTACATTCCAAGGTTCTACCTGATCTTCCCATTGAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCAGGAGCTGCTTATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTACTTACTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGAAGGGAATTCAGTCCTATGAAATGCCATCTCGACTATCTCGATTGTGGTACTCTAAATGATGTCGACCGTAGGATATGGGAAGTCAATACAACAGTATTTACCCAATGTTCTCCCGATGAAGATGTCGTTTTCAATTACGGGATATTTGCCAATGCAATCTCGAAAAACGTCATCTCGTTTGGGTTCGCTCAAAAGTACTTCTACTGTCTTTGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGTTTGGAGACAAGCACCTTCATAGGAGAGACTTCGTTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCTCATTTGATTGGTAATATGCAGACTTATTTGCAATCCATCACCGTGAGACTGGAGGAGTGGCGGGTGAAGCGGCGAGACACGGAGGAGTGGATGAATCATCGGCAGCTCCCCGAAGATTTACAAGAACGTGTGCGGAGATTTGTTCAGTATAAGTGGCTTGCAACGAGAGGAGTTGACGAAGAATCCATCTTACAAGCCCTTCCAACCGATCTTCGTCGAGATATTCAGCGTCACTTGTGCCTCGACCTTGTTCGACGCGTTCCTTTCTTTGCACAAATGGACGATCAGCTTCTCGACGCAATCTGCGAGCGATTAGCGTCGTCTTTATGTACGCAAGGCACGTTCATTGTTCGTGAAGGAGATCCTGTTACCGAGATGTTCTTCATCATCCGAGGCATGCTCGAGAGTTCCACAACAGATGGAGGAAGATCAGGTTTCTTCAATTCAATAACATTGAGACCTGGAGATTTTTGTGGAGAAGAGCTTCTCGCTTGGGCATTGCTACCAAAATCATCAATCAGTTTGCCATCTTCTACTAGAACAGTTAGAGCAATCACTGAAGTAGAAGCCTTTGCTCTACGAGCCGAGGATCTCAAATTCGTAGCAAACCAGTTTCGACGTCTCCATAGCAAGAAGCTTCAACACACGTTTCGGTTTTACTCGTATCACTGGAGAACATGGGCTGCTTGCTTCATTCAAGCAGCATGGCGTCGGTTCAAGAGGAGAATCATAGCAAAGACGCTCAGTATTCAGGAGTCTTTTTCGTTGAATCCCAAAAAGCCAATGGCCGATGAAGCCGAGCTAGAAGAGGAAGAACATAATCCACGATCTAATTATTCTCAAGCAAAACAAAACCTCGGCGTCACGATATTGGCGTCGAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTTAAGGATGTTAACTTAATGAAGCTGAGAAAGCCCGACGAGCCAGACTTTTCTGAAGAACCAGATGATTAA 3030 46.93 MLGVRSKIVGHLTHYSVVSENPSVTWQKMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGGGGAGRRRSRSPRYRRSPRKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEEWCKGPPSEQELRTTDFSICLSMRNGIKCFWQAGPVEFIADSKLMFYSNEKKNLELPWEKNDGKRRFEFALPVFKMGTAPLTNAVGDKGKISSDLGRFKIFVENNEAQQKWILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIAVTVFRTFADVFYLFHMVLKFRMAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCHLDYLDCGTLNDVDRRIWEVNTTVFTQCSPDEDVVFNYGIFANAISKNVISFGFAQKYFYCLWWGLQNLSSYGQGLETSTFIGETSFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMNHRQLPEDLQERVRRFVQYKWLATRGVDEESILQALPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTFIVREGDPVTEMFFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKTLSIQESFSLNPKKPMADEAELEEEEHNPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLMKLRKPDEPDFSEEPDD 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2201234 2212955 - Cp4.1LG02g04800.1 Cpe02g00396 464345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00396 1009 Gene3D - 193 255 - -
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 987 1002 - -
Cpe02g00396 1009 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 89 IPR000504 GO:0003723
Cpe02g00396 1009 Gene3D Jelly Rolls 768 888 IPR014710 -
Cpe02g00396 1009 ProSiteProfiles Zinc finger CCHC-type profile. 121 137 IPR001878 GO:0003676|GO:0008270
Cpe02g00396 1009 CDD CAP_ED 770 901 IPR000595 -
Cpe02g00396 1009 SMART rrm1_1 31 97 IPR000504 GO:0003723
Cpe02g00396 1009 Pfam Ion transport protein 401 697 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe02g00396 1009 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 366 1006 - -
Cpe02g00396 1009 SMART cnmp_10 770 901 IPR000595 -
Cpe02g00396 1009 ProSiteProfiles Zinc finger CCHC-type profile. 198 214 IPR001878 GO:0003676|GO:0008270
Cpe02g00396 1009 SUPERFAMILY RNA-binding domain, RBD 16 116 IPR035979 GO:0003676
Cpe02g00396 1009 SUPERFAMILY Voltage-gated potassium channels 397 692 - -
Cpe02g00396 1009 Gene3D - 408 696 - -
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 942 962 - -
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 94 115 - -
Cpe02g00396 1009 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 101 IPR000504 GO:0003723
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 211 288 - -
Cpe02g00396 1009 CDD RRM_SRSF3_like 31 99 - -
Cpe02g00396 1009 SUPERFAMILY cAMP-binding domain-like 700 892 IPR018490 -
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 943 958 - -
Cpe02g00396 1009 SMART c2hcfinal6 198 214 IPR001878 GO:0003676|GO:0008270
Cpe02g00396 1009 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Cpe02g00396 1009 ProSiteProfiles cAMP/cGMP binding motif profile. 770 900 IPR000595 -
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 987 1009 - -
Cpe02g00396 1009 Pfam Cyclic nucleotide-binding domain 793 881 IPR000595 -
Cpe02g00396 1009 SUPERFAMILY Retrovirus zinc finger-like domains 103 142 IPR036875 GO:0003676|GO:0008270
Cpe02g00396 1009 Gene3D - 24 99 IPR012677 -
Cpe02g00396 1009 Gene3D Helix hairpin bin 698 761 - -
Cpe02g00396 1009 SUPERFAMILY Retrovirus zinc finger-like domains 180 219 IPR036875 GO:0003676|GO:0008270
Cpe02g00396 1009 Gene3D - 100 145 - -
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 133 193 - -
Cpe02g00396 1009 Pfam Zinc knuckle 198 213 IPR001878 GO:0003676|GO:0008270
Cpe02g00396 1009 Pfam Zinc knuckle 121 136 IPR001878 GO:0003676|GO:0008270
Cpe02g00396 1009 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 366 1006 - -
Cpe02g00396 1009 MobiDBLite consensus disorder prediction 270 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01520 Cpe-Chr1:9104661 Cpe02g00396 Cpe-Chr2:2201234 1.83E-10 dispersed
Cpe02g00396 Cpe-Chr2:2201234 Cpe04g01281 Cpe-Chr4:10588515 0 dispersed
Cpe09g00496 Cpe-Chr9:3294603 Cpe02g00396 Cpe-Chr2:2201234 5.23E-11 dispersed
Cpe02g00396 Cpe-Chr2:2201234 Cpe06g00398 Cpe-Chr6:2249450 1.65E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00396 K05391 - csv:101211072 1152.89