Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00398 ATGGCGGTGGATCTGATGAGTTTTCCGAAGATGGATGATCAGATGGCTATACAAGAGGCCGCATCGCAAGGATTGAAGAGTATGGAGCATCTCGTTCGTCTTCTTTCTCACAAGCAATCTTCAAACCATGTCGATTGCTCTGATCTAACTGATGCGACTGTTTCGAAGTTTAAGAAAGTGATTTCGCTTCTCAATCGGACTGGCCACGCCAGGTTCCGACGAGGTCCGGTATCTAATTCGACCTCTTCCTCCTCGTCTGGTTCAGTTCCTCAAAATCAGGCGATGAACATCACTCCTACTCCGTTTACTTCATCGGCGACGGTTTCTGCTCCGTCGTTCACCGCTCCAGTCACCGTCGCTCAGCCACTGACGAAGGTTGCTGCGGCGGCGAACTTTCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGATACCTTCAGCGTCTCTTCGAGTTCTTCGTTTATGTCCTCTGCTATTACCGGAGACGGCAGCGTATCCAACGGAAAATTAGGAACCTCGATCTTTCTGGCACCGGCTCCGTCTGCTTCCGGCGGAAAACCGCCACTCTCGGCGCCGCCATACAAGAAGAGGTGTCACGAACACGATTATTCCGAAGATTTGTCCGGGAAATTCTCCGGTTCTACCTCTGCTTCCGGCAAGTGCCATTGCTCAAAGAGAAGGAAAAACCGTATGAAGAAGACGATCCGAGTCCCGGCGATTAGTTCTAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGAAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGTGGATATTACAAGTGTAGCTCGATGAGAGGATGTCCAGCGAGGAAACACGTGGAGAGGGATCCAAATGATCCAGCGATGTTGATTGTAACGTACGAAGGAGAGCATCGCCATACACAGAGCTCCTTGCCGGAAAATATGGCCACCGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA 1041 49.76 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLVRLLSHKQSSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSNSTSSSSSGSVPQNQAMNITPTPFTSSATVSAPSFTAPVTVAQPLTKVAAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKDTFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPSASGGKPPLSAPPYKKRCHEHDYSEDLSGKFSGSTSASGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMATGVALVFESS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2230984 2233174 + Cp4.1LG02g04820.1 Cpe02g00398 464347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00398 346 Pfam Plant zinc cluster domain 215 266 IPR018872 -
Cpe02g00398 346 SUPERFAMILY WRKY DNA-binding domain 266 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe02g00398 346 SMART WRKY_cls 268 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe02g00398 346 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 345 - -
Cpe02g00398 346 MobiDBLite consensus disorder prediction 72 94 - -
Cpe02g00398 346 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 345 IPR044810 GO:0003700
Cpe02g00398 346 Pfam WRKY DNA -binding domain 270 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe02g00398 346 Gene3D WRKY domain 247 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe02g00398 346 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe02g00398 346 MobiDBLite consensus disorder prediction 74 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00194 Cpe-Chr2:1008099 Cpe02g00398 Cpe-Chr2:2230984 9.21E-73 dispersed
Cpe02g00398 Cpe-Chr2:2230984 Cpe06g00175 Cpe-Chr6:949236 1.54E-77 dispersed
Cpe18g00648 Cpe-Chr18:6631860 Cpe02g00398 Cpe-Chr2:2230984 8.72E-45 dispersed
Cpe02g00398 Cpe-Chr2:2230984 Cpe06g00394 Cpe-Chr6:2231470 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49000 PF03106 WRKY 5.70E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00398 - - bhj:120087087 592.808