Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00405 ATGGCCAATCCTATCACTCTCCAAGAGATTCGTAACGAGTCCGTCGATCTGGAGCATATTCCAATCGGCGAAGTGTTTGAGAAGCTAAAATGCACAAAAGAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCGAACAAACTGGAAGAGAAAAAGGAGAGCAAAATCCTGAAATTTCTAGGGTTTATGTGGAACCCTCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTAGCAAACGGCGGCGGAAGGCCTCCGGACTGGCAGGATTGCGTGGGAGTCATTGCCCTACTTTTAATCAACTCAACCATCAGCTTTCTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGTCTTGCTCCTAGAACTAAGGTTCTCAGAGACGGTCGTTGGAGTGAGCAAGATGCTGCCATGTTGGTTCCAGGAGATATAATAAGTATCAAACTGGGAGACATTGTCCCTGCTGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAGATTGATCAATCTGCTTTAACTGGCGAGTCCCTCCCGGTTACCAAAAACCCTTCGGACGAGGTTTTTTCGGGGTCGACGTGTAAACAGGGAGAAATCGAAGCAGTAGTGATTGCCACTGGTGTGCATACCTTCTTTGGAAAAGCTGCTCATTTAGTGGACAGCACCAATCAAGTTGGGCATTTCCAAAAAGTTCTTACTGCCATTGGGAACTTCTGTATTTGCTCCATTGCTATTGGAATTGTTATTGAGATCATAGTCATGTACCCAATTCAACATCGTGCATATAGGGATGGCATTGACAATTTGCTGGTTCTTTTGATTGGAGGAATTCCTATTGCCATGCCCACTGTTTTGTCTGTCACCATGGCCATTGGTTCCCACCGTCTTTCTAAGCAAGGTGCAATTACCAAGCGGATGACTGCCATTGAGGAGATGGCTGGCATGGATATTTATGCAGTTTCCATCACCATCCGTATAGTGTTTGGTTTTCTGTTGATTGCTTTGATTTGGAAATTTGATTTCGCTCCATTCATGGTTCTAATTATAGCTATTCTAAACGATGGAACAATCATGACCATTTCGAAGGATCGAGTTAAGCCTTCTCCGCAGCCCGACAGTTGGAAGTTGAAGGAAATTTTTGCTACTGGCATTGTGTTGGGTGGATACTTGGCTCTGATGACAGTGTTATTCTTCTGGATCGTGCGAGATACCGACTTTTGCTCGAACAAGTTTTACGTAACATCCCTGAGGAACGACGACCCGAGAATGATGGCAGCATTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATCTTCGTCACAAGGTCTCGAAGTTGGTCCTTCGTGGAACGTCCTGGACTTCTCTTAGTGAGCGCTTTCATAGTTGCCCAGCTGGTAGCAACATTAATAGCAGTGTATGCAAGCTGGGATTTTGCAAGAATAAAAGGCACTGGGTGGGGATGGGCTGGTGTGATCTGGCTTTATAGTTTGATAACTTACATCCCTCTTGATATCCTCAAATTTACCATTCGCTATATTCTTAGTGGAAGGGCTTGGAACAACCTTTTGCAGAACAAGACTGCTTTCACAACCAAGAAAGATTACGGGAAAGAAGAGAGAGAAGCACAATGGGCAACCACACAAAGAACCATTCATGGTCTTCAACTACCTCAATCCAACAACGCTCTCTCTGATAGGAACAGTTGTGGGGAGCTCTCCGAAATCGCCGAGCAAGCCAGACGACGCGCTGAAATTGCAAGGTTGCGGGAGTTGCACACTCTAAAAGGTCGGGTGGAATCGGTGGTGAAGTTGAAAGGACTAGACATCGACACAATTAATCAACATTACACTGTCTAA 1893 45.54 MANPITLQEIRNESVDLEHIPIGEVFEKLKCTKEGLSSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRPPDWQDCVGVIALLLINSTISFLEENNAGNAAAALMAGLAPRTKVLRDGRWSEQDAAMLVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGIVIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDIYAVSITIRIVFGFLLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWIVRDTDFCSNKFYVTSLRNDDPRMMAALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVSAFIVAQLVATLIAVYASWDFARIKGTGWGWAGVIWLYSLITYIPLDILKFTIRYILSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQLPQSNNALSDRNSCGELSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2256217 2261681 - Cp4.1LG02g04590.1 Cpe02g00405 464354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00405 630 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 526 IPR023298 -
Cpe02g00405 630 PANTHER CALCIUM-TRANSPORTING ATPASE 328 610 - -
Cpe02g00405 630 PANTHER PLASMA MEMBRANE ATPASE 3 328 - -
Cpe02g00405 630 Pfam E1-E2 ATPase 132 310 - -
Cpe02g00405 630 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Cpe02g00405 630 Gene3D - 580 630 - -
Cpe02g00405 630 PANTHER PLASMA MEMBRANE ATPASE 328 610 - -
Cpe02g00405 630 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Cpe02g00405 630 PANTHER CALCIUM-TRANSPORTING ATPASE 3 328 - -
Cpe02g00405 630 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Cpe02g00405 630 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 328 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe02g00405 630 Gene3D - 191 327 - -
Cpe02g00405 630 Gene3D - 328 525 - -
Cpe02g00405 630 Gene3D - 67 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00405 Cpe-Chr2:2256217 Cpe04g01518 Cpe-Chr4:11954464 0 dispersed
Cpe02g00405 Cpe-Chr2:2256217 Cpe07g00251 Cpe-Chr7:1633612 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00405 K01535 - csv:101219224 566.229