Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00409 ATGTCTTTCGGCTTCGATCGAAGAAGCCGCTGCTCAACGAAAATGCCGCTTGGAGATAGAGCAGGCGATAAGAGCGAGTCTCGTTATTGCGGTGTCGAGACTGAATTTGATGACGATGTGCCTCAGCTCTTAATCTCAAATCTATCCTCTGGTGGATTTGATTTCGTCGTCGCACCTCTGATGAATCCATCCTATCGACCAAGCTTGGTGCAAAAAGAGAATGGTTGCTCTGCCGTTCTCCCATTTGCTGGATCAGACTTGATTTTAAGCCCTGCACAGTGGAGCAGCCACGTTGTTGGAAAAATTAGTTCTTGGATTGACTTAGATTCTGAAGATGAGATTTTACGAATTGATTCTGAGACAACTCTAAAGCAAGAGATTGCATGGGCTTCTCATCTCTCTCTGCAGGCATGCCTTCTTCCAGCACCTAAGGGAACATCATATGCTAATTATGCTAGGTGTGTTCATCAGATTTTGCAGGGCCTTAATAACATGCAGTTGTGGCTCAGGATACCTCTGGTGAAGGTTGATGACGATTCTACAGATGCTAAATCTGAACATTTGGTTGATTCTTGGGATTTGTGGAACTCATTTCGTCTGCTTTGCGAGCACCACAGTCAGTTATCAGTTGCACTCGACATTTTGAGTACGTTGCCATCACCAAATTCGCTTGGACGATGGTTTGGGGAGTCTGTCAGAGCAGCCCTTATTAGCACTGATTGTTTCTTGACTAATTCACGGGGTTATCCATGCCTGTCAAAGCGGCACCAGAAGTTGATTACTGGATTTTTCAATCATTCTATTCAGGTAGTTTTATCTGGGAAGGCATTGCACAACGTTTCAAGGGGAGGTACAGATTCGCCTACTGGTCTCAACAAAAGTCCTTCTGATGGTGTTCAGTCTCATCCCTTGAGGTGCTATTTAGATTATGTTGCTTTTCTCTACCAGAGAATGGACCCACTCCCTGAGCAAGAAAGAATTGAGCTTGGATACAGGGATTTCTTACAGGCCCCTCTGCAACCTCTTATGGATAATCTAGAATCTCAAACTTATGAAACTTTTGAGAAAGACGCAGTCAAATACATTCAGTACCAACGTGCAATTGCTAAAGCTTTGAAAGATAGGGTCCCGGATGATAAGGCGTCTTCAGTAACAACAGTATTGATGGTCGTAGGCGCAGGTCGTGGTCCTCTGGTTCGGGCAGCATTGCAGGCAGCAGAAGAAACAGACCGCAAACTGAAAGTTTATGCTGTGGAGAAAAATCCTAATGCAGTTGTAACTCTTAATTGTTTGGTTAGAATGGAGGGCTGGGAAAAAATTGTTACCATAATTTCCTGCGACATGCGTTCCTGGGAAGCTTCAGAGAAGGCTGATATTTTGGTGAGTGAGCTGCTGGGTTCTTTTGGTGACAATGAACTATCTCCAGAATGTCTTGATGGGGCCCAGAGATTCTTAAAAGAAGATGGCATTTCAATACCTTCTTCGTACACGAGTTTCCTCCAACCAATTACTGCCTCCAAGCTATACAATGATGTGAAGGCACATAAAGATGTGGTCCACTTTGAAACTGCCTACGTTGTCAAACTGCACAACGTCTTTACCTTTACTCACCCGAATAAAATATCGGAGGGAAGCAATGAACGGTATAAGAAGCTGGTATTTGAGATACCGAACGACACTGGTGCAGCCATAATACATGGTTTTGGTGGTTATTTTGATGCGACTTTATATGGTGATGTTCATCTGGGCACTGAACCATCCACAGCCACGCCAAATATGTTCGCAATATTCTTCCCATTAAGGACTCCAATATGCGTGCGGCCGGGTTCTTCCGTACAAGTCAATTTCTGGCGTTGTTGTAATCCTAGCAAGGTCTGGTACGAGTGGTGTGTGACGTCTCCCAGCCAGTCCCCGCTACATAACGTCAACGGCCGTTCGTATTGGGTTGGCCTATAA 1956 44.73 MSFGFDRRSRCSTKMPLGDRAGDKSESRYCGVETEFDDDVPQLLISNLSSGGFDFVVAPLMNPSYRPSLVQKENGCSAVLPFAGSDLILSPAQWSSHVVGKISSWIDLDSEDEILRIDSETTLKQEIAWASHLSLQACLLPAPKGTSYANYARCVHQILQGLNNMQLWLRIPLVKVDDDSTDAKSEHLVDSWDLWNSFRLLCEHHSQLSVALDILSTLPSPNSLGRWFGESVRAALISTDCFLTNSRGYPCLSKRHQKLITGFFNHSIQVVLSGKALHNVSRGGTDSPTGLNKSPSDGVQSHPLRCYLDYVAFLYQRMDPLPEQERIELGYRDFLQAPLQPLMDNLESQTYETFEKDAVKYIQYQRAIAKALKDRVPDDKASSVTTVLMVVGAGRGPLVRAALQAAEETDRKLKVYAVEKNPNAVVTLNCLVRMEGWEKIVTIISCDMRSWEASEKADILVSELLGSFGDNELSPECLDGAQRFLKEDGISIPSSYTSFLQPITASKLYNDVKAHKDVVHFETAYVVKLHNVFTFTHPNKISEGSNERYKKLVFEIPNDTGAAIIHGFGGYFDATLYGDVHLGTEPSTATPNMFAIFFPLRTPICVRPGSSVQVNFWRCCNPSKVWYEWCVTSPSQSPLHNVNGRSYWVGL 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2284334 2291026 + Cp4.1LG02g04730.1 Cpe02g00409 464358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00409 651 Gene3D Vaccinia Virus protein VP39 328 494 IPR029063 -
Cpe02g00409 651 Pfam PRMT5 oligomerisation domain 495 649 IPR035248 -
Cpe02g00409 651 Pfam PRMT5 arginine-N-methyltransferase 324 492 IPR035075 -
Cpe02g00409 651 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 15 651 IPR025799 GO:0016274|GO:0018216
Cpe02g00409 651 Gene3D - 28 324 - -
Cpe02g00409 651 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 335 629 IPR025799 GO:0016274|GO:0018216
Cpe02g00409 651 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 350 650 IPR029063 -
Cpe02g00409 651 Pfam PRMT5 TIM barrel domain 52 316 IPR035247 -
Cpe02g00409 651 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 15 651 - -
Cpe02g00409 651 PIRSF PRMT5 17 651 IPR007857 GO:0006479|GO:0008168|GO:0035246
Cpe02g00409 651 Gene3D - 495 651 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00409 K02516 PRMT5, HSL7; type II protein arginine methyltransferase [EC:2.1.1.320] - csv:101221977 1180.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00409 Cpe-Chr2:2284334 Cpe06g00374 Cpe-Chr6:2145132 4.17E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g264 . . . . . . . . . . Cma01g01558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01605 . . . . . . Cpe02g00409 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010530 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00409 Cpe_Chr02 FPKM 20.792332 20.778566 38.161545 35.378811 119.6922 141.131393 131.516129 34.455147 34.710602 35.945827