Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00419 ATGCCGGGGCTAACCTGCAATGCCTGTAACAAAGAATTTATAGACACCGAGGAGCAAAAGCTTCACTACAAATCCGAATGGCATCGATACAATCTTAAGCGCAAGGAAATTGCCTTAAACGGGTTTAAGTTTTGCAAGGAATTTGTTAAAATTCTGGATGTTTTTAAGGTGGCTAATGTTCCTGGGGTTACAGAGGCATTATTCTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAGAGACCGCAATGTCATACTCTTGTGGCCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCCAAGAGTCATATCATCCGAGCTTCACAAGGAACACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATTTCTAATAGGGTGACCCAACAAAATGAGGAAGAGAGTGAGGAGTGGGAAGAAGCTGATTCTGACGAAGACATGATCGATGAGAATGACGATGAGGGTGAAGACAATGATTCTGATGCCATTGAGGTGGACTTGGATCCATCGTGCTGCTTCATGTGTGATTTCGAGCATGATACCATTGATAGCTGCATGGTTCACATGCATAAACAACATGGATTCTTTATTCCTGATGTTGAATATTTGAAGGATCTGAAAGGCTTCCTTACATACCTCGGTCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAACGATAATCGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCGAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGACGAGAACGAAGAAGTAGAATTGGAAGAATTTTATGACTACAGTAGCAGTTATGTGGATGGAAGTGGCAACCAGCTAGTAGCATCAGGGGATGGGGCCAATTCTGTTCAGCTTGGTAGTGGTGGAGCTGAGCTCATCTTAGCTCAAAGAACAAGCGATCGGCAATCGACCAAAACGCTTGGTTCCAGGCAATTTATACGTTATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATAACTGCTGCATTGGCAGCAAGGTACAAGAGCATGGGATTGGCAACTGTCCAGTCGAGGGAGAGGACGATCAGGATGAAGGTGATGAAAGAAATTAATCGAACCGGATTGGAAGCCATGCGTACCAAAGTCGGATTGAAGAACAACATAATCCGAAACCTGCCTAATAATGTTCCATACTAG 1242 43.96 MPGLTCNACNKEFIDTEEQKLHYKSEWHRYNLKRKEIALNGFKFCKEFVKILDVFKVANVPGVTEALFLARQSAAAAQENAKSETAMSYSCGLCSKAYRSAQAHAQHLKSKSHIIRASQGTHDQEVEKPIIKPLPQRISNRVTQQNEEESEEWEEADSDEDMIDENDDEGEDNDSDAIEVDLDPSCCFMCDFEHDTIDSCMVHMHKQHGFFIPDVEYLKDLKGFLTYLGLKVMRDFRCLYCNDNRLPFSSLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSGNQLVASGDGANSVQLGSGGAELILAQRTSDRQSTKTLGSRQFIRYYRQKPRPSPANDAAITAALAARYKSMGLATVQSRERTIRMKVMKEINRTGLEAMRTKVGLKNNIIRNLPNNVPY 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2318966 2322208 - Cp4.1LG02g04550.1 Cpe02g00419 464368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00419 413 MobiDBLite consensus disorder prediction 148 176 - -
Cpe02g00419 413 PANTHER ZINC FINGER PROTEIN 622 1 41 IPR040025 -
Cpe02g00419 413 SMART c2h2final6 4 28 IPR013087 -
Cpe02g00419 413 SMART c2h2final6 185 208 IPR013087 -
Cpe02g00419 413 SMART c2h2final6 236 263 IPR013087 -
Cpe02g00419 413 SMART c2h2final6 89 113 IPR013087 -
Cpe02g00419 413 SUPERFAMILY beta-beta-alpha zinc fingers 171 227 IPR036236 -
Cpe02g00419 413 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Cpe02g00419 413 MobiDBLite consensus disorder prediction 132 176 - -
Cpe02g00419 413 ProSitePatterns Zinc finger C2H2 type domain signature. 91 113 IPR013087 -
Cpe02g00419 413 PANTHER ZINC FINGER PROTEIN 622 56 413 IPR040025 -
Cpe02g00419 413 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cpe02g00419 413 SUPERFAMILY beta-beta-alpha zinc fingers 88 119 IPR036236 -
Cpe02g00419 413 Pfam C2H2 type zinc-finger (2 copies) 187 288 IPR041661 -
Cpe02g00419 413 PANTHER ZINC FINGER PROTEIN-RELATED 56 413 - -
Cpe02g00419 413 PANTHER ZINC FINGER PROTEIN-RELATED 1 41 - -
Cpe02g00419 413 SMART ZnF_U1_5 86 120 IPR003604 GO:0003676|GO:0008270
Cpe02g00419 413 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00419 Cpe-Chr2:2318966 Cpe06g00387 Cpe-Chr6:2192998 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49001 PF12756 zf-C2H2_2 1.00E-25 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00419 K14816 - csv:101219700 620.157