Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00441 ATGTCGTTCTTTTCCGGTATCTTACTCGGCATTGTTGTCGGCGTCTTACTGATCGTCGCTCTTGCTCGCGCTGCGAGCGTTCGCGCCAAGTGTCGCTCCGATTTGGCGATGACTATTGCGGCATTTGCAAGAATGACGGCACAGGATTCGAGAAAAGTTATTCCCAAGGAGTTTTATCCGTCGTGGGTTGTTTTTACGCAGCAACAAAAGTTACATTGGCTCAATCATCAGCTTGAGAAAATCTGGCCATATGTTGATGCGGCAGCATCGGAGCTGATAAGGAGCAATGTGGAGCCGGTTCTCGAACAATTTCGACCGGCTATATTATCCTCTTTGACGTTCTCGAAGTTGACCCTTGGTACTGTATCTCCAAATTTTACAGGAATCGATGTACTTGAAGATGAGGCAGACACTGGTGGAATAACCTTGGAGTTGGAGATGCAGTGGGATGGTAATCCAAACATTGTTCTTGACATTAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATATTGCATTCACAGGGCTTTTCAGATTAATGTTCAAACCATTGGTCGACGAGTTTCCTTGCTTTGGAGCAGTGTGTTATTCTCTGAGGAAGAAGAAAAATCTTGATTTTAAACTTAGGATTATTGGAGGAGATATATCATCTATTCCTGGGGTTTCTGTTGCTATTGAGGAAACAATTCGAGATGCAATCGAAGGTAGCATAATTGACTTAGAGGCGAAGCCTGTTGGAACATTAGAACTGAAGCTCGTGCAAGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCAGATCCTTATGCTGTGCTGTTTATACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAACAATCAATTGAATCCCATATGGAATGAGCACTTTGAATTCATTGTTGAAGATGCGTCTACTCAACACTTGACTATAAGAGTTTTTGACGACGAAGGAGTTCAGGCATCAGAACTAATTGGATGTGCTCAATTTGCATTGAAGGACCTCGAGCCTGGTAAAGTGAAGGATGTTTGGTTGAAGCTGGTGAAAGATTTGGACATCCAAAGAGATAACAAAAACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCCTTTGGCACTGATAAGAACCTCTATACAAACCCATTTGACCCAGATTATACATTGACCTCGGTGGAGAAGGCTCTACAGACGGCTCCGTATGGCTCAGAAGATTCGGATTCTGGAAAACCAAGTTCCCCACAGAAGAGGGATGTGATAGTGAGAGGAGTCCTGTCTGTGACAGTAATAGGTGCTGAAGAGTTGCCTTCTGTAGATTTCATGGGAAAAGCCGATCCATACGTTGTCCTCGTTATGAAGAAATCCGAGACCAAAGTTAAAACCAGGGTTGTACATGACACTCTGAACCCTGTCTGGAATCAAACGTTCGACTTTCTGGTGGAGGATGCATTACACGATTTGCTAATTTTAGAGGTCTGGGATCATGACACTTTTGGAAAGGATAAACTGGGGAGGTTCTTAATGACGCTGACAAGAGTGATATTGGAAGGAGAAATTCAGGACAGTTTTCCACTGGAAGCAACCAAATCAGGGCGGATTTTTGTGCATCTCAAGTGGGCAGCTCAGCCAATCTTCCGAGACACTTGA 1665 43.18 MSFFSGILLGIVVGVLLIVALARAASVRAKCRSDLAMTIAAFARMTAQDSRKVIPKEFYPSWVVFTQQQKLHWLNHQLEKIWPYVDAAASELIRSNVEPVLEQFRPAILSSLTFSKLTLGTVSPNFTGIDVLEDEADTGGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDIAFTGLFRLMFKPLVDEFPCFGAVCYSLRKKKNLDFKLRIIGGDISSIPGVSVAIEETIRDAIEGSIIDLEAKPVGTLELKLVQAKELTNKDIIGKSDPYAVLFIRPLKERMKTSKTINNQLNPIWNEHFEFIVEDASTQHLTIRVFDDEGVQASELIGCAQFALKDLEPGKVKDVWLKLVKDLDIQRDNKNRGQVHLELLYYPFGTDKNLYTNPFDPDYTLTSVEKALQTAPYGSEDSDSGKPSSPQKRDVIVRGVLSVTVIGAEELPSVDFMGKADPYVVLVMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDLLILEVWDHDTFGKDKLGRFLMTLTRVILEGEIQDSFPLEATKSGRIFVHLKWAAQPIFRDT 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2488358 2492583 + Cp4.1LG02g04370.1 Cpe02g00441 464390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00441 554 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 553 IPR045050 GO:0008289
Cpe02g00441 554 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 254 IPR031468 GO:0008289
Cpe02g00441 554 ProSiteProfiles C2 domain profile. 412 529 IPR000008 -
Cpe02g00441 554 Pfam C2 domain 249 353 IPR000008 -
Cpe02g00441 554 Pfam C2 domain 429 531 IPR000008 -
Cpe02g00441 554 Gene3D C2 domain 417 547 IPR035892 -
Cpe02g00441 554 Gene3D C2 domain 242 377 IPR035892 -
Cpe02g00441 554 PANTHER SYNAPTOTAGMIN-4 1 553 - -
Cpe02g00441 554 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 236 IPR039010 -
Cpe02g00441 554 SMART C2_3c 250 350 IPR000008 -
Cpe02g00441 554 SMART C2_3c 430 528 IPR000008 -
Cpe02g00441 554 PRINTS C2 domain signature 446 458 IPR000008 -
Cpe02g00441 554 PRINTS C2 domain signature 494 502 IPR000008 -
Cpe02g00441 554 PRINTS C2 domain signature 472 485 IPR000008 -
Cpe02g00441 554 CDD C2 431 531 - -
Cpe02g00441 554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 361 535 IPR035892 -
Cpe02g00441 554 ProSiteProfiles C2 domain profile. 232 351 IPR000008 -
Cpe02g00441 554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 247 378 IPR035892 -
Cpe02g00441 554 CDD C2 251 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00441 - - - csv:101210249 952.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00441 Cpe06g00325 CCT
Cpe02g00441 Cpe06g00325 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00441 Cpe-Chr2:2488358 Cpe07g01121 Cpe-Chr7:9860286 5.10E-135 dispersed
Cpe02g00644 Cpe-Chr2:3967457 Cpe02g00441 Cpe-Chr2:2488358 4.15E-17 dispersed
Cpe11g01048 Cpe-Chr11:8777294 Cpe02g00441 Cpe-Chr2:2488358 3.31E-09 wgd
Cpe02g00441 Cpe-Chr2:2488358 Cpe06g00325 Cpe-Chr6:1797810 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00441 Cpe_Chr02 FPKM 8.980869 9.345284 8.453426 7.773499 11.240503 11.662693 12.169535 5.711484 5.114236 5.911972