Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00443 ATGAAGCAGAGTATATCTGAGGCAGTATCTTCATCCACCACGGGATTGACGGAGCAATCTCAATCCTCCTCGTCGTCGTCGTCGGCGACGTTGGAGAAGTCTCAATCCATATCGGCTGCGGCGGCGGCGGAGGATTTGGCCGTAGGGTCGAGAGATGGCGGCGGGGCACAAGAAACGGTGACTGTCGATCGGCGGGGGGATTTCTCTGCCGTGTGTAGATGGACAGTACAAAATTTCCCGAGAATCAAGGCTAGGGCTCTATGGAGCAAGTACTTCGAGGTCGGAGGTTACGATTGCCGTCTGTTGATATATCCGAAGGGGGATTCCCAAGCGCTACCGGGGTATATTTCAATCTACCTTCAAATCGTGGACCCGCGCGGTACATCGTCGTCCAAATGGGATTGCTTTGCGAGCTATCGTTTGGCCATCGTCAACGTTCTGGATGATTCGAAGACCGTTCATCGGGATTCTTGGCATCGATTCTCTAGCAAGAAGAAATCTCACGGATGGTGCGATTTTACTCCCTCTTCCACCGTGTTTGATTCTAAGCTTGGCTATTTGTTTAATAATGAGTCCATTTTGATCACTGCTGATATTCTAATCCTCAATGAGTCTGTAAACTTTACCCGGGATAACAATGAGCCAGCCTCATCTATGATGATGGCATCATCGGTTGTTGCTTGCCCTGTGCCTGAGGTGCTCAGCGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAAGAAATGATAAAAACCCAGAAAATAATGAGCCCCGTGTTCCCAGCTGGCGAGTGTAATTTGAGGATTAGCGTCTATCAGAGCTCAGTTAATGGGACTGAGTATTTATCAATGTGTCTAGAGAGTAAGGATACCGAAAAGACAGTAATATTACCTGATAGGAGTTGTTGGTGTTTGTTTCGGATGTCCGTGTTGAACCAGAAGCCTGCTTTGAATCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGATAATACCAGTTTGGGGTGGAATGACTACATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGATGATACCGCTGTGTTTAGTACCTCTTTTCATGTGATCAAGGAATTTAGTAGTTTTTCGAAGAATGGTGGATTTATTGGTGGTAGAAATGGGAGTGGAATTAGGAAATCAGATGGTCACCTAGGCAAATTCACGTGGAGGATTGAGAACTTCACAAGGTTGAAGGATCTTTTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGATTCCAGGTGGGGAATCGAGACTGTCGTCTTATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTCCTTGAAGTTACGGATTCAAGAATCACTTCCAGTGAGTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTTGTGAACCAGAAGATGGAAGAGAAGTCTGTTACAAAGGAGTCCCAAAACCGGTACTCCAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACTAGCCTCTTTGATCAGGATTCCGGTTTTCTCGTTCAGGATACTGTAATATTCTCAGCAGAGGTTCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGACCAAGACGTGGAGACGACTGGTTCCAGCTCTGTGATGGATAAGGTAGCAAAAAAAAGTTCATTTACATGGAAAGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACCCGTAAAATCTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGCATTGGCGTCTATGAGTCCTTTGACACCATTTGCATCTATCTGGAGAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTTAGATACAAAATGGCCGTGGTGAATCAAAAATATCCAGCAAAAACTGTATGGAAGGAGTCTTCTATTTGTACAAAGACATGGAATAATTCAGTTTTGCAATTCATGAAGGTGTCAGATATGCTAGAGGCAGATGCGGGGTTTCTTGTACGAGACACGGTGGTTTTCGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACTGATCCAGATGATCTCATTGATTCTGAAGACAGTGAAGGAATAAGTGGTGATGAAGAAGACATTTTTAGAAACCTTCTCTCTACAGCCGGATTTCATCTAACATATGGAGATAATCCTTCACAACCACAGGTCACTTTGCGAGAAAAACTTTTGATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTGCTTCTTCCTACTAAGCTATCCAGTAGCAATGATGGGAAAAAGGTCTCAAAGACAGATGAGTCTTCCCCCAGTTTAATGAATTTGCTTATGGGAGTCAAAGTTTTACAGCAAGCAATCATTGATTTACTCTTGGATATAATGGTCGAGTGTTGCCAACCTTCAGAAGGGGGCTCTGGGGACCATTTGGAAGCAAATTCAAAGCCTTCCATTCCTAGCAGTGGAACTACTACTACACCACTGGAAGGTGAAAATGAAAATGGAGCAATAGAGGCTGCAGATTGTCCTCCATTTCAGAGATTGGATACTGTTGATGAAAGTAGTAGTGCACCTGCTGTACAAAGCTCGGACATGACTAGAACTGATAGGCAGGGCAGGTCTCAACCTGAAGAGCTAATACATCCACCTGAAACATCTGCTGGGGTTTCAGAGAGTGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGCTTGATTGTGAATTCATTGAGAGCCCTAGATGGGGCTGTCTCCCGAGGATGTCCTGAGCCAAAAAGACGGCCTCAATCCGCACAAAAGATGTCTCTTGTGCTGGATAAAGCTCCCAAGCATCTACAGTCTGACCTGGTTGCACTAGTACCCAAATTAGTTGAGCATTCAGAACATCCTTTGGCTGCTGGTGTGCTTCTAGAACGGCTTCAACAGCCCGGTGCTGAGCCAGCACTCCGGATACCTGTTTTTGGTGCTCTTAGTCAATTGGAGTGTGGTACTGAAGTTTGGGAACAGGTTCTATTTAAATCTATTGAGTTTTTAGCAGATTCAAACGATGAGCCTCTTGCTGCAACTATGGATTTTGTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCAGTGAGATCTGTTCGTGTTAGGCTGAAGAATTTGGGCATGGATGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACAGTAAATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGATGCTGATGATTTCCACTCAAAGATATCACGTGAGCTTTTCTTATTTGGGGAACCTGGCCCTGCTTCAGAAAGTCTGCATCCGTTGGATGAGCAGGATTTACATGCTGCTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCTATACCTTGTCTTGCCGTCGAAGCATCACAGACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACAGCTAAATCTGTTGCTGTGGTGTTGAAAAAACGTCTTGCTCAAAAAGCAAATAGCAATGCTAGATTCGTAGCTGAAAGCTTCCAGCATGGAGATTCTGTAATAGATGGTGAACCTAGTGAGCAGCTGAGAGTCCAGCGGGATGATTTTACTTCTATTGTTGGTCTTGCCGAAACATTAGCACTCTCTAGAGACCCTTGCGTTAGAGGATTTGTGAAAATGCTTTATCCATCATTGTTTAAGTGGTATGCAAGTGAATCTTATCGAGCCAGGATGCTGAAAAGATTGGTTGACCGTGTCACCAGCAGTGCAGATAATAACCGTGAAGTAGATATGGATTTGGAAATTTTGGTTACCTTAATTGGTGATGAACAAGAAATAATTAGACCTGTGCTAAATATGATGCGGGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGATGAAATCATCCGTATCCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAAAAAGCTGTTCTTTCACAAAAACTTGGTGAATCTGAAGCCATGATCAATCGCCTAAAGGCTGAGATGAAGGCTGAGATGGAGAGATTTTCTCGCGAGAGAAAGGAACTTTCTGAACAAATGCATGACATTGAGAGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGGTTGTGAAGTTAACATCAGAGAAGAAAGTTCTCCATGATCGTCTCCATGATGCTGAGACTCAAATTGCGCAGTTGAAATCCCGAAAACGTGATGAGATGAAGAAAGTGGTTAAGGAAAAAAATGCACTTGCTGAGAGGTTAAAGAGTGCTGAAGCTGCTCGAAAAAGATTTGACGAACAACTGAAACGGTATGCAAATGAAAATATGACGAGGGAAGAAATCCGGCAGTCATTGGAAGATGAAGTTCGCCGGCTTACACAAACAGTTGGACAGACTGAAGGAGAAAAGAGGGAGAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAAGCTAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCACTACAAGAAGAGATGTCCAGACATGCCCCTCTCTATGGTGCCGGTTTGGAAGCTCTGTCAATGAAGGAGCTGGAGACATTATCCCGAATTCACGAAGAAGGATTAAGGCAAATCCATACTCTTCAGCAGCGCAAAGGGAGTCCAGCTGGCAGTCCTCTCGTGAGCCCTCATTCCCTCGCTCACAGTCACGGGTTGTACTCTGCAGCACCTCCCTCGATGGCTGTCGGGATGCCTCCTTCACTCATGCCCAATGGCTCAGGGATCCACAGCAATGGACATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 5049 44.11 MKQSISEAVSSSTTGLTEQSQSSSSSSSATLEKSQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMASSVVACPVPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGTEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSSFSKNGGFIGGRNGSGIRKSDGHLGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRITSSEWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDVETTGSSSVMDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDDLIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSSSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEANSKPSIPSSGTTTTPLEGENENGAIEAADCPPFQRLDTVDESSSAPAVQSSDMTRTDRQGRSQPEELIHPPETSAGVSESVFLRTKTKWPEQSEELLGLIVNSLRALDGAVSRGCPEPKRRPQSAQKMSLVLDKAPKHLQSDLVALVPKLVEHSEHPLAAGVLLERLQQPGAEPALRIPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAATMDFVFKAGAQCQHLSEAVRSVRVRLKNLGMDVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDDADDFHSKISRELFLFGEPGPASESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLKKRLAQKANSNARFVAESFQHGDSVIDGEPSEQLRVQRDDFTSIVGLAETLALSRDPCVRGFVKMLYPSLFKWYASESYRARMLKRLVDRVTSSADNNREVDMDLEILVTLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEDEIIRIREESKVEISNMMKEKAVLSQKLGESEAMINRLKAEMKAEMERFSRERKELSEQMHDIESQLEWLRSERDDEVVKLTSEKKVLHDRLHDAETQIAQLKSRKRDEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLAHSHGLYSAAPPSMAVGMPPSLMPNGSGIHSNGHVNGGAVGPWFNHA 1682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2499748 2509335 - Cp4.1LG02g04260.1 Cpe02g00443 464392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00443 1682 MobiDBLite consensus disorder prediction 899 919 - -
Cpe02g00443 1682 MobiDBLite consensus disorder prediction 863 881 - -
Cpe02g00443 1682 CDD MATH 236 368 IPR002083 GO:0005515
Cpe02g00443 1682 ProSiteProfiles MATH/TRAF domain profile. 571 695 IPR002083 GO:0005515
Cpe02g00443 1682 SUPERFAMILY TRAF domain-like 404 545 - -
Cpe02g00443 1682 SUPERFAMILY TRAF domain-like 70 207 - -
Cpe02g00443 1682 Coils Coil 1454 1562 - -
Cpe02g00443 1682 MobiDBLite consensus disorder prediction 1 31 - -
Cpe02g00443 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 68 214 IPR008974 GO:0005515
Cpe02g00443 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 401 559 IPR008974 GO:0005515
Cpe02g00443 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 232 378 IPR008974 GO:0005515
Cpe02g00443 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 560 697 IPR008974 GO:0005515
Cpe02g00443 1682 ProSiteProfiles MATH/TRAF domain profile. 235 372 IPR002083 GO:0005515
Cpe02g00443 1682 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1681 - -
Cpe02g00443 1682 CDD MATH 573 695 IPR002083 GO:0005515
Cpe02g00443 1682 CDD MATH 73 199 IPR002083 GO:0005515
Cpe02g00443 1682 ProSiteProfiles MATH/TRAF domain profile. 69 199 IPR002083 GO:0005515
Cpe02g00443 1682 ProSiteProfiles MATH/TRAF domain profile. 403 539 IPR002083 GO:0005515
Cpe02g00443 1682 SMART math_3 240 353 IPR002083 GO:0005515
Cpe02g00443 1682 SMART math_3 71 179 IPR002083 GO:0005515
Cpe02g00443 1682 SMART math_3 576 676 IPR002083 GO:0005515
Cpe02g00443 1682 SMART math_3 408 520 IPR002083 GO:0005515
Cpe02g00443 1682 MobiDBLite consensus disorder prediction 898 941 - -
Cpe02g00443 1682 SUPERFAMILY TRAF domain-like 233 378 - -
Cpe02g00443 1682 CDD MATH 404 539 IPR002083 GO:0005515
Cpe02g00443 1682 SUPERFAMILY TRAF domain-like 571 696 - -
Cpe02g00443 1682 MobiDBLite consensus disorder prediction 853 881 - -
Cpe02g00443 1682 Pfam MATH domain 77 201 IPR002083 GO:0005515
Cpe02g00443 1682 Pfam MATH domain 435 541 IPR002083 GO:0005515
Cpe02g00443 1682 Pfam MATH domain 584 691 IPR002083 GO:0005515
Cpe02g00443 1682 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1681 - -
Cpe02g00443 1682 Coils Coil 1390 1442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00443 - - - cmos:111446723 3187.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00443 Cpe06g00327 CCT
Cpe02g00443 Cpe06g00327 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00443 Cpe-Chr2:2499748 Cpe08g00937 Cpe-Chr8:7346446 4.29E-07 dispersed
Cpe02g00443 Cpe-Chr2:2499748 Cpe06g00327 Cpe-Chr6:1811813 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00443 Cpe_Chr02 FPKM 146.446106 150.071548 89.484192 84.49469 54.728767 61.278683 46.766987 292.616882 297.838715 276.642975