Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00448 ATGGCAATCGACGGCGTTTGCACACTCGATGTCGCCGATTTTCCGCCGCCTCCGGTGGTCGAGAAGCGTCGCCAGTCATTCTCGCTGCTTTTGTCTTCTTTGATGATTGTTGGATTCTCGAGGAAGAGTGGTTTGTATCGGCAGCTTCCGCATCAGCCTCTCGAACTCTCCGTCCTGAAATTGGATGGCTCTTGTTTTGATATTCGAGTTAAGAGATCTGCTACTGTTGCTGAATTAAAGGGGGCAGTGGAGGCAGTCTTCAGCGACATGCCACAAGATGGACCAGGAAAGATTTCATGGCTCCATGTGTGGTGCCATTTCTGCTTATGCTATGATGGTCAGAAGTTGATTGATGATACGGGCTACATTGCAAAATTAGGCATCAAGGATGGTGATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATAAGAAAGCAATCAAAGAAAGGCCAGGTTTCCCCAAAACTGAACAATAGGACATCATCTCTATCAAGAAACTATGATCAGGACGATATAGAGAGTGGAAGGATTCAACACCATGGCAACAACCAACTCTTCAAACACCACGAGCCAAAGATGGTGGTCTTTTTGGGAGGGTGGTTCTCCCACATCAAGCTGGCATCTGCAGGGAAAACGTGCATCGAAAGCTTGGTTCGTTCGTCGGGAACTCGGCATAGTCTGGTTCATGGTTTTAAGAACTTAATTCAACTATGCCGCCAGAAACAATATTATCAGAAAGTGAGTAAAAGGAAGAGATCCATCCTTGGTGTCTGA 786 46.31 MAIDGVCTLDVADFPPPPVVEKRRQSFSLLLSSLMIVGFSRKSGLYRQLPHQPLELSVLKLDGSCFDIRVKRSATVAELKGAVEAVFSDMPQDGPGKISWLHVWCHFCLCYDGQKLIDDTGYIAKLGIKDGDQLQFVRHVTTGYNVIRKQSKKGQVSPKLNNRTSSLSRNYDQDDIESGRIQHHGNNQLFKHHEPKMVVFLGGWFSHIKLASAGKTCIESLVRSSGTRHSLVHGFKNLIQLCRQKQYYQKVSKRKRSILGV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2530223 2537293 - Cp4.1LG02g04250.1 Cpe02g00448 464397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00448 261 Pfam Ubiquitin-like domain 55 140 IPR040610 -
Cpe02g00448 261 Gene3D - 50 146 - -
Cpe02g00448 261 CDD Ubl_SNRNP25 54 139 IPR040610 -
Cpe02g00448 261 SUPERFAMILY Ubiquitin-like 50 143 IPR029071 -
Cpe02g00448 261 MobiDBLite consensus disorder prediction 152 171 - -
Cpe02g00448 261 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 11 252 IPR039690 GO:0000398|GO:0005689
Cpe02g00448 261 ProSiteProfiles Ubiquitin domain profile. 54 143 IPR000626 GO:0005515
Cpe02g00448 261 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 11 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00448 - - - csv:101219460 380.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00448 Cpe06g00334 CCT
Cpe02g00448 Cpe06g00334 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00448 Cpe-Chr2:2530223 Cpe02g01642 Cpe-Chr2:13694170 1.92E-30 dispersed
Cpe06g00044 Cpe-Chr6:229091 Cpe02g00448 Cpe-Chr2:2530223 7.61E-14 transposed
Cpe02g00448 Cpe-Chr2:2530223 Cpe04g01196 Cpe-Chr4:10127483 4.16E-27 wgd
Cpe02g00448 Cpe-Chr2:2530223 Cpe06g00334 Cpe-Chr6:1848624 7.79E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g493 . . . . . . . . . . Cma01g01506 . Car09g00397 . . . Cpe06g00334 . . . . . . . Cla05g01733 Cam05g1846 Cec05g1858 Cco05g1918 Clacu05g1834 Cmu05g1717 Cre05g1848 Cone4ag1781 . . . . Csa03g04329 Chy04g00372 . . . . . . . . . Sed13g2019 . Cmo09g00460 . . . . . Cpe02g00448 Bhi09g02232 Tan01g3635 Cmetu04g2649 . Hepe01g2015 Mch11g0551 . . . . . . . . . . . Cme04g00414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013027 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00448 Cpe_Chr02 FPKM 62.662441 68.424614 60.770294 51.86171 87.858353 75.124908 96.530296 71.04184 75.259293 82.824379