Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00460 ATGATTTGTTTCTTTACCGAAGATATAGGAGTGGGAAGTGATGAGGAGGAGACAAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCTGCAGCCGGCGGCACTTCAGCGTCTGGTAAAGCCCCTGCATCAGATGGCGTAAGGAGCAGAGGACGAAGCTCCGCTGACAAAGAAAGTAAAAGGCTTAAGAGATTGTTAAGAAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAAAAGGCGTATTTGGGCGACTTGGAAATTCGAGCAGCAAACTTGTTGAAAAGGAACTCCGAGCTTGAAGAGAATCTGTCCACGTTACAAAATGAGAATCAGATGCTTAGACACATACTAAAGAACACAACAACCAACAAGAGAAGTGATGGGGACACTGCTAATGCAAACCAGGCTGTATAG 417 47.0 MICFFTEDIGVGSDEEETSRVPQICGNSASAAGGTSASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQAV 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2612716 2616385 - Cp4.1LG02g04130.1 Cpe02g00460 464409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00460 138 CDD bZIP_HY5-like 61 112 - -
Cpe02g00460 138 Coils Coil 83 117 - -
Cpe02g00460 138 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 58 121 IPR004827 GO:0003700|GO:0006355
Cpe02g00460 138 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 13 127 - -
Cpe02g00460 138 Coils Coil 55 75 - -
Cpe02g00460 138 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 13 127 IPR044280 GO:0000981|GO:0045944
Cpe02g00460 138 MobiDBLite consensus disorder prediction 1 78 - -
Cpe02g00460 138 Gene3D Single helix bin 79 120 - -
Cpe02g00460 138 SMART brlzneu 56 120 IPR004827 GO:0003700|GO:0006355
Cpe02g00460 138 MobiDBLite consensus disorder prediction 50 78 - -
Cpe02g00460 138 Pfam bZIP transcription factor 57 117 IPR004827 GO:0003700|GO:0006355
Cpe02g00460 138 SUPERFAMILY Leucine zipper domain 60 118 IPR046347 GO:0003700|GO:0006355
Cpe02g00460 138 MobiDBLite consensus disorder prediction 20 37 - -
Cpe02g00460 138 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 63 78 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00460 K16241 HY5; transcription factor HY5 - csv:101205952 194.897
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00460 Cpe07g00288 CCT
Cpe02g00460 Cpe11g00334 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00460 Cpe-Chr2:2612716 Cpe08g01349 Cpe-Chr8:9718011 6.48E-06 dispersed
Cpe11g00334 Cpe-Chr11:1775675 Cpe02g00460 Cpe-Chr2:2612716 2.64E-45 wgd
Cpe02g00460 Cpe-Chr2:2612716 Cpe07g00288 Cpe-Chr7:1900392 3.80E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g458 . . Bda01g00765 . Bpe02g01240 . . . Cmo05g00389 Cmo12g00279 Cma01g01495 Cma05g00390 . Car12g00311 Sed07g1964 Cpe07g00288 . Bhi04g00047 Tan02g2761 Cmetu03g1346 . Hepe10g0217 . Lcy13g1832 Cla05g01750 Cam05g1863 Cec05g1875 Cco05g1939 Clacu05g1854 Cmu05g1735 Cre05g1867 Cone4ag1802 . Cone17ag1030 . Lsi04g02144 Csa03g04347 Chy04g00355 Cme03g01624 Blo17g00025 Blo18g00033 Bda01g00995 Bda13g01268 Bpe14g00575 . Bma01g01283 Bma02g00029 . Cmo01g01551 . . Cma12g00329 . Car05g00331 Cpe11g00334 Cpe02g00460 . . . . . . . Cla08g01323 Cam08g1785 Cec08g1363 Cco08g1490 Clacu08g1479 . Cre08g1268 Lsi08g01193 . Chy03g01131 Cme04g00394
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014246 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 2 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49005 PF00170 bZIP_1 7.00E-12 CL0018 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00460 Cpe_Chr02 FPKM 6.725136 6.386829 10.017858 9.803016 18.973806 16.097944 17.297258 9.228204 9.990219 9.883323