Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00464 ATGAGGCGCGCTGCTACTCCTCCTCCTCCGCTCCATCAACTGTCCGCCGCCGTCTCCACCGCCACTGCTGCCGCCGACACATCTGCTGCCATGTCTTCTCGTCCTCCATACCGAGGTGGCCGGTCAGGACGCGGCAGAGGATTCTCGTCGGAACGGCCATATTCTGGCGGTAGAGGTCAATTCGTCACCGGTGATTCTCATTTCCAGTCTGTTCGGGAGTCCAACCTAGGGTTCCGTCAAGGAGAGAGAGGAGGCTTTGTGAACAAGGCGGGATCGTATGCTGCACCTCAGAATCCTAGACCTCCGTCTTTTGGTGGAAATCACCAATTCCGACAGGCTCCAGCTCACACTCAAAGGCACCAGTATCGGGGACCTTATCCTCACACTTACAACCAGCAGCCACCGCCTTTTCATCAAAATCAAGGTGTTCGTACGCCGCAGCAATTTCGACCTCGCCCTCCGAAGCCGTTAGATTTCCGCCATTGGGATTATGCAAGGACACCTCCTCCAGCTACTTGCGAGAGGTTTACAATTCTTTCATACAACATCTTAGCGGATTACCTTGCCATGGACCACAAGCAAAAGCTCTACCATCATATTCCCCATTACATGTTGGATTGGGAATGGAGGAAAAATAATATATTGTTTGAGCTTGGATTATGGTCTACTGACATAATGTGCTTTCAGGAGATTGATAGATTCCCTGACTTGGAGGAAGCATTGAAACTTCGTGGGTTCAGTGGCATTTGGAAGATGCGTACTGGACCTCCAGTTGATGGTTGTGCAATCTTTTGGCGAGTATCAAGGTTCAAGCTTCTTCACGAGGAGTATATTGAGTTCAATAAACTTGGACTTCGGGACAATGTTGCCCAGATATGTGTTCTTGAGAGTCAGGACAATGCTGACAATTCAGTTACTCCACCAGTTAGCGTATCAAATCTCAATAAAGTTGTAATATGTAATATACATGTCCTGTACAACCCTAAAAGAGGAGAAATCAAGCTTGGCCAGGTCAGGGTTCTCTTGGAGAAGGCTGATTCCATTTCAAAACTCTGGGACAATGCTCCAATTGTTCTCTGCGGGGATTTTAACTGTACACCCAAGAGTGCATTATATAACTTCATTACGGAACAAAAGTTGGATTTGTCTGGATTGGACAGAGACAAGGTTTCAGGTCAAGCTTCTGCTGAGATTCATCAACCTTCACCACTCTATCATAATCCTCGGCTTCAGACTGTCAATGTTTCAGTTCCTCTCCAACTGAGGTCAGAGTCTAGAGATATTGAAATGAAGCCAGATAGTTCTCTATCTGACACACAGAAACAAGATCGTCCACATCTTCCACCGGTGAACCTCTCGTTGCCACCTGATAGTAATTGCAGTGTCTTTGATGCATCTGATAATTCTTGTAACGATCTCCAACTTGGAATGAAGGGTATTACTCTTCATTCTGAAGGGCAAAAGGAAAGCCAGCATAGTACTTCTTTTGACCCCAAAAGTGTAGCTGGCTGCGAAAAGATAGACAGCTTCAATGAAAGTTCAATCACATGTCCTAAAGATGAGTTTACTGTTGATCATACCAGTGAAAAAGTCGGCGACTTAGACTCTTCTTCAGGAACTGACCTTGAAGAACTTCATCTGAATGTAACTGAGAAACAACAGATGGAGAATGTTCATACCTCTCGTTTCAACCATAAATCTTCTACGGATGGTTTTGATATGGACCACAATTTTCACATGGAAAGAAAAAACAGTGTCGATAATATTATCTTAGATGATGCACAGCTTGATTCACCGACAAATTTATTGGACACGAAGAATGCTCCTCTTACATCTACTCGCCAAAACTCCGTGGCTGACAGTGCTAGAAATAGTGAAGCTGGCCCATCATTGTCTTCGCTCAGCATTCACTCAGCAGCAATGGATGAGAGACCTAAGGTTTTAGTCTCAGATGAGCAGGATGTAGCCACGTTAGATGGAGGCTTAACGGAGGATGATCGTACGTTTCTCTCAGCTCTGCATGATGTTGACGATCCCTTTTCATCCGAGATTCATCTAACTGTTGGCCATTCACACACTGGAGTTGAAGATGCTTTGTTACCAGGCTTGAATACTAAGCCTTTTGAGGTTGAAAATATTATTTATGATCCCTCATCATGGACTCCAATGGAAATAGAAACTGCAACTGGCAATGCAGACTGTCCCTTAATCGAACACCCTCTAAAGCTTAGAAGCACATATACAGAAGTTGAGGACTTTTCCGGGACCAGAGACTTGAATGGCGAACCCCTGGCGACTAGTTACAATAGGCGTTCAGAAGGTCTCCAGACGGTTAGGGTGCTTGCTCCTATAAAGAAACAAGTCATGCAGCAGTTGACTCCTGGATTTCCTACAAAGATTTTGTTGGTGGATGATGCC 2418 45.24 MRRAATPPPPLHQLSAAVSTATAAADTSAAMSSRPPYRGGRSGRGRGFSSERPYSGGRGQFVTGDSHFQSVRESNLGFRQGERGGFVNKAGSYAAPQNPRPPSFGGNHQFRQAPAHTQRHQYRGPYPHTYNQQPPPFHQNQGVRTPQQFRPRPPKPLDFRHWDYARTPPPATCERFTILSYNILADYLAMDHKQKLYHHIPHYMLDWEWRKNNILFELGLWSTDIMCFQEIDRFPDLEEALKLRGFSGIWKMRTGPPVDGCAIFWRVSRFKLLHEEYIEFNKLGLRDNVAQICVLESQDNADNSVTPPVSVSNLNKVVICNIHVLYNPKRGEIKLGQVRVLLEKADSISKLWDNAPIVLCGDFNCTPKSALYNFITEQKLDLSGLDRDKVSGQASAEIHQPSPLYHNPRLQTVNVSVPLQLRSESRDIEMKPDSSLSDTQKQDRPHLPPVNLSLPPDSNCSVFDASDNSCNDLQLGMKGITLHSEGQKESQHSTSFDPKSVAGCEKIDSFNESSITCPKDEFTVDHTSEKVGDLDSSSGTDLEELHLNVTEKQQMENVHTSRFNHKSSTDGFDMDHNFHMERKNSVDNIILDDAQLDSPTNLLDTKNAPLTSTRQNSVADSARNSEAGPSLSSLSIHSAAMDERPKVLVSDEQDVATLDGGLTEDDRTFLSALHDVDDPFSSEIHLTVGHSHTGVEDALLPGLNTKPFEVENIIYDPSSWTPMEIETATGNADCPLIEHPLKLRSTYTEVEDFSGTRDLNGEPLATSYNRRSEGLQTVRVLAPIKKQVMQQLTPGFPTKILLVDDA 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2627065 2635615 - Cp4.1LG02g04150.1 Cpe02g00464 464413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00464 806 MobiDBLite consensus disorder prediction 81 121 - -
Cpe02g00464 806 MobiDBLite consensus disorder prediction 424 440 - -
Cpe02g00464 806 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 46 800 - -
Cpe02g00464 806 SUPERFAMILY DNase I-like 165 381 IPR036691 -
Cpe02g00464 806 MobiDBLite consensus disorder prediction 1 64 - -
Cpe02g00464 806 MobiDBLite consensus disorder prediction 102 116 - -
Cpe02g00464 806 MobiDBLite consensus disorder prediction 423 455 - -
Cpe02g00464 806 MobiDBLite consensus disorder prediction 600 632 - -
Cpe02g00464 806 MobiDBLite consensus disorder prediction 13 29 - -
Cpe02g00464 806 Gene3D Endonuclease/exonuclease/phosphatase 150 443 IPR036691 -
Cpe02g00464 806 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 46 800 - -
Cpe02g00464 806 Pfam Endonuclease/Exonuclease/phosphatase family 179 384 IPR005135 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00464 - - - csv:101217096 1152.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00464 Cpe-Chr2:2627065 Cpe18g00755 Cpe-Chr18:7268081 7.52E-06 dispersed
Cpe02g00464 Cpe-Chr2:2627065 Cpe08g00926 Cpe-Chr8:7272760 9.99E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g410 . . . . . Bpe02g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00464 Bhi09g02274 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009856 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00464 Cpe_Chr02 FPKM 11.36908 12.890133 10.880637 10.09996 24.428356 21.389305 25.834723 9.273603 9.616003 9.362873