Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00470 ATGGCGTATCACAATCCCCTCTCCCACGACCTTCCCCTCCACTTCTCCGACCAACAACCGCCGCAGAATCAACCACTTTCCGATGCCTCTTTGCGTACCATTCTCCCGGACCCCAAATCCCACCACCACCACCACCACCCGCCGCAAACGGCACCGAATTGGCTTAACAACGCACTTCTCCGTAACCAAAACCCCCATTCTCACTACTCTACCGACACTACCACCACCGCCACCGCCGCCGTCAATACCAATTTCCTCAACCTTCACACCACAGCATCCGATTCCACTGTTTCTCACTCGTCTAACCAATGGCTCTCCCGTCCGATTCTCCAGAGAAACCACAGCGATGTTATTGATGATGTCGCCACCGCCGGTGACGCTATGATCGGTGCCGCTAATGATGCCAATAGCGGCGATGGATTGAACAAAAGCGACGGCATGACGGTGGAACCTGGCGGCGGCGGTAGTGGTGGTGGTGGAGAAGGGGTTTTGAATTGGCAATATGCTCGTTACAAAGCCGAGATTCTTGCTCATCCGCTTTATGAACAGCTGCTTTCAGCTCATGTCGCTTGTCTTCGTATCGCCACGCCCGTCGACCAATTGCCGAGGATTGACGCGCAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCCGCCTTGGGCCACACCGCGCCGCTCATGGTCGGCGACGACAAAGACCTCGATCAATTCATGACGCATTATGTTCTTTTGCTTTGTTCGTTCAAAGAACAACTCCAGCAACATGTTCGTGTCCATGCCATGGAAGCTGTAATGGCTTGCTGGGACATCGAGCAGTCGCTTCAAAGCTTAACAGGAGTTTCACCCGGCGAAGGCACGGGAGCGACAATGTCAGACGACGACGACGACCAGGTCGATAGCGATGCAAATTTGTTCGAAGCGAGCTTAGATTGTCCTGACACCATGGGATTTGGGCCTCTTATTCCCACAGAAACTGAGAGGTCCTTGATGGAAAGGGTCAGACAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAAAGGAGAGCTGGAAAGCTCCCTGGTGATACCACCTCTGTTCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGTAAGTTGA 1173 51.83 MAYHNPLSHDLPLHFSDQQPPQNQPLSDASLRTILPDPKSHHHHHHPPQTAPNWLNNALLRNQNPHSHYSTDTTTTATAAVNTNFLNLHTTASDSTVSHSSNQWLSRPILQRNHSDVIDDVATAGDAMIGAANDANSGDGLNKSDGMTVEPGGGGSGGGGEGVLNWQYARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPLMVGDDKDLDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFEASLDCPDTMGFGPLIPTETERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTVS 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2662202 2664990 - Cp4.1LG02g04000.1 Cpe02g00470 464419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00470 390 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 388 - -
Cpe02g00470 390 Gene3D - 358 390 - -
Cpe02g00470 390 SMART ELK_2 337 358 IPR005539 GO:0003677
Cpe02g00470 390 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 39 388 - -
Cpe02g00470 390 Pfam KNOX1 domain 171 212 IPR005540 GO:0003677|GO:0005634
Cpe02g00470 390 MobiDBLite consensus disorder prediction 15 30 - -
Cpe02g00470 390 SMART KNOX2_2 225 280 IPR005541 GO:0003677|GO:0005634
Cpe02g00470 390 ProSiteProfiles ELK domain profile. 337 357 IPR005539 GO:0003677
Cpe02g00470 390 Pfam KNOX2 domain 229 279 IPR005541 GO:0003677|GO:0005634
Cpe02g00470 390 Pfam ELK domain 337 358 IPR005539 GO:0003677
Cpe02g00470 390 SMART KNOX1_2 169 213 IPR005540 GO:0003677|GO:0005634
Cpe02g00470 390 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00470 Cpe-Chr2:2662202 Cpe11g00311 Cpe-Chr11:1683405 0 dispersed
Cpe02g00470 Cpe-Chr2:2662202 Cpe06g00313 Cpe-Chr6:1740266 0 wgd
Cpe02g00470 Cpe-Chr2:2662202 Cpe07g00308 Cpe-Chr7:1998675 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00470 - - bhj:120085761 659.448