Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00474 | ATGAAGACGGATCCAGTGCGGGATAGGCCTGTTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGCGAATTGAAAGAGATGAGAAAATCGAATCACAAACTCTCGCAGTTTCAATCATCAAATGGAGAAGGACGAACAGCAATAGATTAACGGAAACAAGAAGTTCAGACTTCAGAGAGTTGAATAACAATACGTACCATCTTCGAGTCCTGTGTTCCGCGGCGAACTTGGAAGCAGACGGCGGTCTAACGAAAACCCTATCAGTATCGAACAAGAAGACGAGGATTTGGCTTGGAACATTTGAAACGGCGGAGGATGCAGCTAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGACCAAACGCAAGAACGAATTTCCCGTACAATCCAAACACGATTCAGTCGTCGAATTCCAAGATCTTGTCGGCCAATTTGACTGCGAAATTGCATAAATGTTATATGGCTTCTTCGCAGATTAGTAACCAGGAGTTTAAAAGAGAACTTCCGCCGCCGTTTGTGGCGGCGTCTTATGCCGATGCGGCGAGATCGATGGTGGAGGAGAATCGACCAACGGCGGCCGAGGCGGCGGAGCAAGAGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA | 708 | 46.47 | MKTDPVRDRPVLPHLLRELLLDSESLVRRLRIERDEKIESQTLAVSIIKWRRTNSNRLTETRSSDFRELNNNTYHLRVLCSAANLEADGGLTKTLSVSNKKTRIWLGTFETAEDAARAYDEAARLMCGPNARTNFPYNPNTIQSSNSKILSANLTAKLHKCYMASSQISNQEFKRELPPPFVAASYADAARSMVEENRPTAAEAAEQEELKLLEDDHIEQMIEELLYYGSMEFCL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2695544 | 2698755 | + | Cp4.1LG02g04070.1 | Cpe02g00474 | 464423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00474 | 235 | Pfam | AP2 domain | 100 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00474 | 235 | Gene3D | AP2/ERF domain | 73 | 137 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe02g00474 | 235 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 101 | 234 | - | - | |
Cpe02g00474 | 235 | SUPERFAMILY | DNA-binding domain | 99 | 138 | IPR016177 | GO:0003677 | |
Cpe02g00474 | 235 | ProSiteProfiles | AP2/ERF domain profile. | 60 | 136 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00474 | 235 | CDD | AP2 | 97 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe02g00474 | 235 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 101 | 234 | - | - | |
Cpe02g00474 | 235 | SMART | rav1_2 | 90 | 142 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00474 | Cpe-Chr2:2695544 | Cpe12g00767 | Cpe-Chr12:6986397 | 1.03E-38 | dispersed | |
Cpe11g00305 | Cpe-Chr11:1656406 | Cpe02g00474 | Cpe-Chr2:2695544 | 4.03E-06 | dispersed | |
Cpe02g00474 | Cpe-Chr2:2695544 | Cpe07g00313 | Cpe-Chr7:2027334 | 6.81E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49006 | PF00847 | AP2 | 6.00E-06 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00474 | - | - | csv:101216179 | 165.236 |