Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00474 ATGAAGACGGATCCAGTGCGGGATAGGCCTGTTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGCGAATTGAAAGAGATGAGAAAATCGAATCACAAACTCTCGCAGTTTCAATCATCAAATGGAGAAGGACGAACAGCAATAGATTAACGGAAACAAGAAGTTCAGACTTCAGAGAGTTGAATAACAATACGTACCATCTTCGAGTCCTGTGTTCCGCGGCGAACTTGGAAGCAGACGGCGGTCTAACGAAAACCCTATCAGTATCGAACAAGAAGACGAGGATTTGGCTTGGAACATTTGAAACGGCGGAGGATGCAGCTAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGACCAAACGCAAGAACGAATTTCCCGTACAATCCAAACACGATTCAGTCGTCGAATTCCAAGATCTTGTCGGCCAATTTGACTGCGAAATTGCATAAATGTTATATGGCTTCTTCGCAGATTAGTAACCAGGAGTTTAAAAGAGAACTTCCGCCGCCGTTTGTGGCGGCGTCTTATGCCGATGCGGCGAGATCGATGGTGGAGGAGAATCGACCAACGGCGGCCGAGGCGGCGGAGCAAGAGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 708 46.47 MKTDPVRDRPVLPHLLRELLLDSESLVRRLRIERDEKIESQTLAVSIIKWRRTNSNRLTETRSSDFRELNNNTYHLRVLCSAANLEADGGLTKTLSVSNKKTRIWLGTFETAEDAARAYDEAARLMCGPNARTNFPYNPNTIQSSNSKILSANLTAKLHKCYMASSQISNQEFKRELPPPFVAASYADAARSMVEENRPTAAEAAEQEELKLLEDDHIEQMIEELLYYGSMEFCL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2695544 2698755 + Cp4.1LG02g04070.1 Cpe02g00474 464423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00474 235 Pfam AP2 domain 100 128 IPR001471 GO:0003700|GO:0006355
Cpe02g00474 235 Gene3D AP2/ERF domain 73 137 IPR036955 GO:0003700|GO:0006355
Cpe02g00474 235 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 101 234 - -
Cpe02g00474 235 SUPERFAMILY DNA-binding domain 99 138 IPR016177 GO:0003677
Cpe02g00474 235 ProSiteProfiles AP2/ERF domain profile. 60 136 IPR001471 GO:0003700|GO:0006355
Cpe02g00474 235 CDD AP2 97 138 IPR001471 GO:0003700|GO:0006355
Cpe02g00474 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 101 234 - -
Cpe02g00474 235 SMART rav1_2 90 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00474 Cpe-Chr2:2695544 Cpe12g00767 Cpe-Chr12:6986397 1.03E-38 dispersed
Cpe11g00305 Cpe-Chr11:1656406 Cpe02g00474 Cpe-Chr2:2695544 4.03E-06 dispersed
Cpe02g00474 Cpe-Chr2:2695544 Cpe07g00313 Cpe-Chr7:2027334 6.81E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49006 PF00847 AP2 6.00E-06 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00474 - - csv:101216179 165.236