Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00481 TCTGTAAAGCTTGATGCTTTGCAGCAATACAGAGTTGAGTCGGTCGGTCGAGTTGACAATAAAATAAATGAGCAGCGCAGTATAAGGAAACTATTTTGTGTTGTTCTTTTGCATTACATATCGACCGTGAAGGGTGGCTGGCAACAATTAGAAGAAACAACAATCTTCTTAATTATGCAGTCTGAGAAAGGCCAAGTCTCCTTTAAATACTTTCTTCGTGATATGTACGAGGATCTGATTCAAATGTTAGTGGATTTATCTTCTGGGGAGAATATATTTGTTACACAACCGTGTCGAGATAATACACTATACCTTCTAAGGCTTGTTGATGACATGCTTATAGCTGAACTCGACCATCAGTTACCGATTCTAGCGAATGTCTTCGATGTCTCTCCCGAATCCATGGAACTGGAGCTTCACATCTCTGCCTTACATGATGTTTTGCAAGGAGACTCTGATGACCAGACAGCAAGATATGCGCAACATCAAATGGACGTTAAAGAGGACAAGATGGATGAAAAATGGTGGCATCTTTACGATAAATTGTGGATTATTATTAGTGAGATAAATGGCAAGGGACCGAACAAATCTTTGCCGAAATCATCAGCTGGAGGTCCTACATTTGGTCAAAGGGCCCGTGGTTTAGTAGAGTCACTCAACCTTCCTGCTGCAGAGATGGCTGCAGTTGTTGTATCAGGAGGCATAGGCAGTGCATTGGGAGGAAAACCAAACAAAATTGTCGATAAAGCCATGCTTTTGCGCTCGGAGAAGTTCCCAAGAATTATTTTTCGACTTGTGATGCTTTACATTTGCAAGGCTCCTCTAGAAAAAGCGTCGCGATGTGTGCAGCAGATTATTTCACTTTTACCTTCTCTTGTGGTTACTGATGATGAGCAAAACAAAAATAGGTTGCAGCTGTTCATCTGGTCTTTGCTTGCTGTTAGGTCACAGTACAGAACGTTAAATACCGATGCTCGCATTCATGTCATATCGCATTTGATTCGAGAAACTGTAAGCTGTTGCAAATCAATACTTGCCAACAGTATGATAAGCACAGACGATTCTTCGGATAATGGTGCTTTTCTTAAAGAGGCTGGGTACATTCACAACCTGATACAAATAGAACGAGTTACTGCAGCTATAGCTGATGAAGTAAACTATATGAAGTTGTCGAAAATTGACCATCAGAAGCAGTTGCATGAACTAAGACTTAGAATGGAAGAAAGCTTATCTAACGAGTCGATCAACCAGAAGGTTTTTGAAGAGGAGATGCAAAGTAGTCTGACTTCCATTTTGATTGCAGACGACAATAGAAAGGCTGCATTCCAGCTTGCTTATGAGGAAGTGCAGCAAAATATCGCAGAAAAGTGGATGCACATGTTTCGTGCTTTGATTGATGAGCGAGGCCCGTGGTCTGCTAATTCTTCTCCAAACATTTCTTCAACACATTGGAAGCTCGACAAGACGGAAGATATGTGGCGACGAAGACCCAAACTAAGAAAGAATTATCATTTTGATGAAAAGTTGTGTCATCCCCCATCAATTTCTCCTAACGACGACATTAATAACGCTGAAAATGTAAAAAAATCTAGTATTGTCGGGCACATGCCGGAGCAAATGAAAAGATTTTTGCTGAAAGGTGCTATGAAGATAACTGATGAAGGAAACTCCGAGCCCATTGAAAATGATGTTGAACCATGTGAACCAAATGCTTCTAATCTCAAGGATTCTTCGGACGGTCAGTACCTAGAGCAAGTCAAAGACGTCGGTGAATGGAAAGATATTGTACAGGACAGAAAAGATACTTCTTTATTTTCTCCGGTGACAGAAGAAAGCGAGGTTCTCACGTCAACTCCATGTGTACTTGTGACATCCAAAAGAAAATTAGCTGGATATTTGGCTGTAATGAAAAACGCTTTGCATTTCTTTGGGGAGTTTTTGGTCGAAGGTACTGGGGGAGCGTCCACCTTTAAGAACTTCGAAGCTCTTAAAAGTTCGGATTTGACTAAGCTCGATCAAAAGCAGAAGTCTCTAAAGTGGCCTCTATATTTACAATTGGATTCCACAAAGGGTACAGTAGTTGATGATGTGGACGTGATGAATGACGATGGCAATTTAAAACGACCACTAAAAAATTTCAGACGTCATCGGAGATGGAACATTGGAAAGATAAAAGGAGTTCACTGGACTCGATATTTGCTTAGATACACTGCGATAGAGATCTTCTTCAGCGATTCCGTTCCACCAGTCTTTTTAAATTTCAACTCACCAAAAGCTGCCAAAGATATTGGGACGTTGATCGTGTCAAGTAGAAATGACTATTTGTTTCCTAAAGGTAGTAGTCGAAATCAAAGTGGAGTTATTTCTTTCGTTGATAGACGTGTTGCCCTCGAGATGGCAGAAAGTGCCCGAGAGAGTTGGAAGAGAAGGGATATTACAAACTTCGAGTATCTAATGATTCTCAATACTCTTTCTGGAAGATCTTACAACGATTTAACTCAGTATCCAGTGTTTCCCTGGGTTTTGGCGGATTACTCCTCCGAGGTTCTTGATTTTAATAAGTCGTCAACTTTTCGTGATCTTTCAAAGCCTGTTGGAGCATTAGATCCGAAACGTTTCGAGGTATTTGAAGATAGATATCGTAACTTTTGTGATCCCGACATACCAAGTTTTTATTATGGATCTCATTACTCAAGCATGGGAATTGTTCTCTACTATCTTCTACGCTTGGAGCCATTTACTTCTCTTCACCGGAATTTGCAAGGGGGTAAATTTGATCACGCAGATCGACTGTTTCAAAGCATCGAGGCGACATATAGAAATTGCTTGTCCAATACAAGTGATGTGAAGGAGTTGATACCTGAGTTCTTTTACATGCCAGAGTTTCTCTGCAATTCAAATCATTATCACTTGGGGGTTAAACAAGATGGTGAACCCTTAGGTGATGTAGTCCTCCCTCCTTGGGCCAAGGGCTCACCTGAAGTATTTATAAGTAAAAACAGGGAAGCACTTGAAAGTGAGTATGTTAGTTCGAATCTACATCACTGGATAGATCTTGTTTTTGGTTATAAGCAGCGTGGAAAACCAGCCGTGGAGGCTGCAAATGTCTTTTATTATCTGACTTATGAAGGTGCTGCTGATCTTGGCACTATGGAAGACGATTTTCAACGATCAGCGATTGAAGATCAAATTGCCAACTTTGGCCAAACGCCAATCCAGATCTTTCGTAAAAAACATCCAAGAAGAGGGCCACCAATACCGATAGCACACCCGTTACATTTTGCTCCGGGTTCCATTAATTTAACGTCCATTATTTCATGTTCCACTCATCGTCCCTCGGCCATATTACACATTAGTATGTTAGACACGCATATTGTCCTTGTGAGCCAAGGGCTAGTTCTGACTGTTAAGATGTGGTTGACCACTCAGTTACAGTATGGAGGAAACTTTACGTTCTCTGGGTCTCAGGAACCTTTTTTTGGAGTGGGTTCGGATATTCTTTCTCCTCGTAAAATCGGGAGCCCTCTAGCTGAAAATTTTGAACTTGGAGGACAATGCTTCGCTACCATGCCGACACCCGCCGAGAACTTTCTGGTTTCTTGTGGGAATTGGGATAATAGTTTTCATATTATTTCCCTTACTGATGGCAGGTTGTTACAAAGCATCCGACAGCATAGTGATGTGGTTAGCTGTGCAGCAGTGACATCGGATGGAAGCATTCTTGCTACGGGAAGTTACGACACTACAGTTATGGTGTGGAATGTTCTCCGTGGTAGGTTCTCTGAAAAAAAAGCACGCAATACACAATCCGAGTCACCTCGAAAAGACAATGTCATTGCAGAGACTCCATTCCATGTTCTCTGTGGGCATGACGACATAATTACGTGCTTATATGTTAGCGTGGAGCTAGACATAGTTATCAGTGGTTCAAAAGACGGGACTTGCATTTTTCATACTCTTCGTGAGGGACGATACATAAGATCTTTGCATCATCCATCTGGTTGTGGATTGTCAAAGCTCGTGGCTTCTCGGCATGGCAGAGTCGTGTTTTATGCTGATGATGATCTTAGTTTGCATCTCTATTCAATAAATGGTAAACATTTGGCTGCTTCGGAATCCAATGGCCGCCTCAACTGTGTCCAACTCAGCCAATGTGGCGAGTTTTTGGTTTGTGCTGGTGATCATGGCCAGATAGTCGTCCGCTCCATGAACTCGCTCGAGGTTATAAGTAGGTACAATGGAATTGGAAAAGTAATCGTGTCTCTAACCGTTACCGCCGAAGAATGCTTCCTTGCTGGAACAAAAGATGGAAGTCTTCTTGTATATTCAATCGAGAATCCTCAGCTACGAAAAGCTAGCCCGTCTCGAAATACCAAAACTAAACCTTCTGCTGTGTGA 4398 41.75 SVKLDALQQYRVESVGRVDNKINEQRSIRKLFCVVLLHYISTVKGGWQQLEETTIFLIMQSEKGQVSFKYFLRDMYEDLIQMLVDLSSGENIFVTQPCRDNTLYLLRLVDDMLIAELDHQLPILANVFDVSPESMELELHISALHDVLQGDSDDQTARYAQHQMDVKEDKMDEKWWHLYDKLWIIISEINGKGPNKSLPKSSAGGPTFGQRARGLVESLNLPAAEMAAVVVSGGIGSALGGKPNKIVDKAMLLRSEKFPRIIFRLVMLYICKAPLEKASRCVQQIISLLPSLVVTDDEQNKNRLQLFIWSLLAVRSQYRTLNTDARIHVISHLIRETVSCCKSILANSMISTDDSSDNGAFLKEAGYIHNLIQIERVTAAIADEVNYMKLSKIDHQKQLHELRLRMEESLSNESINQKVFEEEMQSSLTSILIADDNRKAAFQLAYEEVQQNIAEKWMHMFRALIDERGPWSANSSPNISSTHWKLDKTEDMWRRRPKLRKNYHFDEKLCHPPSISPNDDINNAENVKKSSIVGHMPEQMKRFLLKGAMKITDEGNSEPIENDVEPCEPNASNLKDSSDGQYLEQVKDVGEWKDIVQDRKDTSLFSPVTEESEVLTSTPCVLVTSKRKLAGYLAVMKNALHFFGEFLVEGTGGASTFKNFEALKSSDLTKLDQKQKSLKWPLYLQLDSTKGTVVDDVDVMNDDGNLKRPLKNFRRHRRWNIGKIKGVHWTRYLLRYTAIEIFFSDSVPPVFLNFNSPKAAKDIGTLIVSSRNDYLFPKGSSRNQSGVISFVDRRVALEMAESARESWKRRDITNFEYLMILNTLSGRSYNDLTQYPVFPWVLADYSSEVLDFNKSSTFRDLSKPVGALDPKRFEVFEDRYRNFCDPDIPSFYYGSHYSSMGIVLYYLLRLEPFTSLHRNLQGGKFDHADRLFQSIEATYRNCLSNTSDVKELIPEFFYMPEFLCNSNHYHLGVKQDGEPLGDVVLPPWAKGSPEVFISKNREALESEYVSSNLHHWIDLVFGYKQRGKPAVEAANVFYYLTYEGAADLGTMEDDFQRSAIEDQIANFGQTPIQIFRKKHPRRGPPIPIAHPLHFAPGSINLTSIISCSTHRPSAILHISMLDTHIVLVSQGLVLTVKMWLTTQLQYGGNFTFSGSQEPFFGVGSDILSPRKIGSPLAENFELGGQCFATMPTPAENFLVSCGNWDNSFHIISLTDGRLLQSIRQHSDVVSCAAVTSDGSILATGSYDTTVMVWNVLRGRFSEKKARNTQSESPRKDNVIAETPFHVLCGHDDIITCLYVSVELDIVISGSKDGTCIFHTLREGRYIRSLHHPSGCGLSKLVASRHGRVVFYADDDLSLHLYSINGKHLAASESNGRLNCVQLSQCGEFLVCAGDHGQIVVRSMNSLEVISRYNGIGKVIVSLTVTAEECFLAGTKDGSLLVYSIENPQLRKASPSRNTKTKPSAV 1465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2751505 2763482 + Cp4.1LG02g03890.1 Cpe02g00481 464430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00481 1465 SUPERFAMILY PH domain-like 613 768 - -
Cpe02g00481 1465 ProSiteProfiles BEACH domain profile. 792 1082 IPR000409 -
Cpe02g00481 1465 CDD Beach 807 1082 IPR000409 -
Cpe02g00481 1465 ProSitePatterns Trp-Asp (WD) repeats signature. 1241 1255 IPR019775 -
Cpe02g00481 1465 SUPERFAMILY WD40 repeat-like 1186 1454 IPR036322 GO:0005515
Cpe02g00481 1465 SUPERFAMILY BEACH domain 795 1082 IPR036372 -
Cpe02g00481 1465 ProSiteProfiles Trp-Asp (WD) repeats profile. 1222 1263 IPR001680 GO:0005515
Cpe02g00481 1465 Pfam Beige/BEACH domain 806 1082 IPR000409 -
Cpe02g00481 1465 PANTHER OS06G0678651 PROTEIN 40 1456 - -
Cpe02g00481 1465 Pfam Domain of unknown function (DUF4800) 416 507 - -
Cpe02g00481 1465 PANTHER BEIGE/BEACH-RELATED 40 1456 - -
Cpe02g00481 1465 SMART Beach_2 804 1082 IPR000409 -
Cpe02g00481 1465 SMART WD40_4 1215 1254 IPR001680 GO:0005515
Cpe02g00481 1465 SMART WD40_4 1280 1319 IPR001680 GO:0005515
Cpe02g00481 1465 SMART WD40_4 1405 1443 IPR001680 GO:0005515
Cpe02g00481 1465 SMART WD40_4 1322 1362 IPR001680 GO:0005515
Cpe02g00481 1465 SMART WD40_4 1364 1402 IPR001680 GO:0005515
Cpe02g00481 1465 Gene3D - 612 765 IPR011993 -
Cpe02g00481 1465 Pfam Neurobeachin beta propeller domain 1103 1452 IPR046851 -
Cpe02g00481 1465 Gene3D - 1185 1463 IPR015943 GO:0005515
Cpe02g00481 1465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1222 1255 - -
Cpe02g00481 1465 Pfam PH domain associated with Beige/BEACH 712 764 IPR023362 -
Cpe02g00481 1465 Gene3D BEACH domain 796 1082 IPR036372 -
Cpe02g00481 1465 Pfam Neurobeachin/BDCP, DUF4704 alpha solenoid region 11 57 IPR031570 -
Cpe02g00481 1465 ProSiteProfiles BEACH-type PH domain profile. 609 768 IPR023362 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00481 - - - csv:101204034 2635.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00481 Cpe-Chr2:2751505 Cpe03g01693 Cpe-Chr3:12882231 1.52E-112 dispersed
Cpe02g00481 Cpe-Chr2:2751505 Cpe12g01049 Cpe-Chr12:8720680 6.53E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g530 . Blo12g00736 . Bda03g00451 . Bpe04g00414 . . . . Cma01g01471 . . . . . . . . . . . . . . . . . . . . Cone4ag1289 . . . Lsi04g02285 Csa03g04501 Chy04g00200 . . . . . . . . . . Cmo01g01527 . . . . . . Cpe02g00481 Bhi09g02508 . . . Hepe01g2176 Mch11g0715 . Cla11g01433 Cam11g1487 Cec11g1521 Cco11g1517 Clacu11g1649 Cmu11g1467 Cre11g1885 . . . Cme04g00231
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003187 1 6 2 1 1 0 2 0 2 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00481 Cpe_Chr02 FPKM 5.212585 3.642378 9.863083 9.53119 30.601702 28.102371 30.807463 10.349447 9.173369 10.530248