Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00484 ATCCACCCCGCCAACCAATCGCGCCACTTCCATACTTCTCCAAATTCTAATCTTCGGCGTCGAGCGTCAATCGAAGGTCTCGCAATGTCTTCCCGAGGAGTGCGATTGCAGATACGAGATCATCATGTAGTAGTAGACAATGGAATACTGCAACTAACTTTATCAAAACCAGATGGAATTATCACTGGCATACGTTATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGGTATTGGGATATTGTTTGGAATTCTCCAGGAAGCCAGGGGATATTTGACGTGATTAAGGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTACAAGGATATGGGATCCGTCCCTCGAGGGCAAGGTTGTTCCTCTGAATATCGACAAGAGGTTCATAGTTCTACGTGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACTAGGATCACTTTTAAACTCAGAAAAGATAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGGTTATCTGGAAGATGCCAGACTTTGGGCTTCCCTGAAGCTGTCTTGCTTACCCATCCCAAGAACCCCGAACACAAGGATGAGGTGGATGACAAATACCAATACTCATGTGAAAACAAAGACTTAAAGGTCCATGGATGGATAAGCACCAACCCGCCCATCGGGTTCTGGCAAATTACACCGAGTGATGAATTTCGATCAGGCGGGCCACATAAGCAGAGTTTAACATCCCATGTGGGACCTACAACTCTTGCTATATTTCTTAGTACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAAATGGCGAGCCATGGAAGAAAGTTTTTGGGCCTGTTTTTCTTTATCTTAACTCCACTAAAGCTGGAGATGATCCCTTTTGGTTATGGGAGGATGCTAAAATACAGATGATGACAGAAGTCCAAAGTTGGCCATACAGTTTCCCCGCCTCCGACGATTTCCCGAAACTGGATCAACGGGGTACCATTAGCGGTAGGCTTCTGGTTTTCGACAGGTATATGAACCGAGACTATCTTCCAGCCGGTGGAGCGTTCGTCGGATTGTCTGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCGGATGATCGTGGCTATTTTATCATCAATCACGTTCACATTGGCCAATATAATCTATATGCATGGGTCCCTGGCTTCATTGGTGATTACCGTTGCGATGCCTTAATCAACATAAGCCAAGGATCTAGCATTGAACTTGGCGATCTTGTTTACGAACCTCCAAGAGATGGACCGACACTATGGGAGATAGGCATTCCCGATCGCTCCGCGTCGGAGTTCTACGTTCCTGATCCTAATCCATTGCATATTAATAAGCTCTTTGTAAATCATCCTGAAAGGTTTCGACAGTACGGGTTGTGGGAGAGGTACGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGCACAAGTGATTATAGAAAAGATTGGTTCTTTGCTCAGGTCCCAAGGAAGACGAACAATAATTCACATCAAGGAACTACCTGGAAAATCGCATTCAAACTCGATCAAGTAGATCGCAAGAGTAGGTATATGCTACGAGTTGCAATCGCATCTGCAACTCTTGCTGAATTGCAGATTCGGGTTAATGATCTGAGTTCAAAACGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTTACACCTTGTTGAAGGAGATAACGCAATCTTCTTTACTCAGCCACGCTGCACCAGCCCTTTCCAAGTGACGATATCGAATCCGATGGGATTTGTCACCGGAATAGAATACCATGGGATTGAAAACTTGCTTGATGTGACCAATCCTGAAGATGATAGAGGATATTGGGACGTTGTTTGGAACACCGCAGGAGCGAAAGGAACCAAAGGCATGTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATCGTACAAAATGACGAACAGATAGAACTCTCATTCAGCAGAACTTACAATTCATCCTCCGGAGACGACGTAGTTCCTTTGAATGTCGACAAAAGGTTCGTGATACTACGAAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCAGCGTTTAACATCGACAACACCAGAATCGCATTCAAGCCGCGAAAAGACAAGTTTCGGTACATGGTAGTAGCAGATGAGAGACAGAGATTCATGCCTTTACCAGACGATCGGAAGCCACCGCGAGGGGTAGCCCTAGAGTATCCAGAGGCCGTCCTCCTTGTGGTTCCTATAGAACCCGAGTTCAAGGGAGAGGTAGATGACAAGTACCAATACGGGTGCGAAAGCAAAGACAGTCGGGTTCACGGGTGGATATCCAACGACCCGCCCATTGGCATTTGGCAAATCACAGCCAGCGAGGAGTATCGCTCCGGTGGGCCCCTCAAACAAGTTCTCACCTCCCATGTGGGTCCCACCTCCCTTACAGTTTTCCATAGCGCTCATTACGCAGGAGCGGCTATGGTGATACGGTTTGGAAGTAACGAGGCATGGAAGAAGGTGTACGGCCCTGTCTTTATACATATCAATTCCTTGCCTGAAAAAGAAGATCCACTCGGACTTTGGCAAAATGCTAAACAACAGATGAATGCTGAAGTTCAAAGCTGGCCTTACAATTTCCCTGCATATGTGAGTAATGAATCCATACCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGGGAACTTGGCTCCTGGCAAACAGAAAGCAAGGGCTACCAATTCTGGAGCAGAGCAGATGAGAATGGACATTTCACTTTGGAAAATGTTCTCAGTGGAAATTATAGTCTTAATGGATGGGTCTATAATTTTATCAGCGAGTACCAATATGATGCTTTCATCACTGTAACCCCAGGCAGCGATATCGATGTGGGTGAACTTGTTTTCGAGCCCCCAAGAGATGGTCCTACATTATGGGAAATAGGCATTCCAGATCGTACTGCTGCAGAATTCTATGTACCAGATCCTAGTCCCAAGTTTATTAATAAACTTTTTGTCAATCATTCAGATAAGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAATTATATCCTAAGGAGGACCTAGTTTATACGGTTGACCAAAGTGACTACAAAAAAGATTGGTTCTTTGCACAAGTTAACAGGAAGATAGACGACAACAACACATATGTAGGAACTACTTGGAAAATTGAGTTCAAAATTGACAGTCCAGATACACATGGAACATATAAGCTGCGTCTTGCATTGGCCACTGCACATGCTGCAGAATTACAAGTTCGAGTGAATGATGCACAAGCAGTTACCCCGTTATTCACAACTGGAGTAATTGGAAAGGACAACACTATAGCTAGACATGGAATTCACGGCCTGTACCGGTTTTACAGTGTCGATATTCCAGGCAGTGAGCTTGTGGCGGGCAACAATACGATTTTTCTTACACAAACAAATGACCACGGTCCTTTTGTTGGGATTATGTATGATTATATTCGTTTAGAAGGACCCTTAACGTCCTAA 3723 44.51 IHPANQSRHFHTSPNSNLRRRASIEGLAMSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIVWNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRIWDPSLEGKVVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLGFPEAVLLTHPKNPEHKDEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFWLWEDAKIQMMTEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDRYMNRDYLPAGGAFVGLSAPGEVGSWQRECKGYQFWTRADDRGYFIINHVHIGQYNLYAWVPGFIGDYRCDALINISQGSSIELGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPLHINKLFVNHPERFRQYGLWERYAELYPDEDLVYTVGTSDYRKDWFFAQVPRKTNNNSHQGTTWKIAFKLDQVDRKSRYMLRVAIASATLAELQIRVNDLSSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGLHLVEGDNAIFFTQPRCTSPFQVTISNPMGFVTGIEYHGIENLLDVTNPEDDRGYWDVVWNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDDVVPLNVDKRFVILRNSSGFYSYAIYEHLKEWPAFNIDNTRIAFKPRKDKFRYMVVADERQRFMPLPDDRKPPRGVALEYPEAVLLVVPIEPEFKGEVDDKYQYGCESKDSRVHGWISNDPPIGIWQITASEEYRSGGPLKQVLTSHVGPTSLTVFHSAHYAGAAMVIRFGSNEAWKKVYGPVFIHINSLPEKEDPLGLWQNAKQQMNAEVQSWPYNFPAYVSNESIPASGAYVGLALPGELGSWQTESKGYQFWSRADENGHFTLENVLSGNYSLNGWVYNFISEYQYDAFITVTPGSDIDVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPSPKFINKLFVNHSDKFRQYGLWERYAELYPKEDLVYTVDQSDYKKDWFFAQVNRKIDDNNTYVGTTWKIEFKIDSPDTHGTYKLRLALATAHAAELQVRVNDAQAVTPLFTTGVIGKDNTIARHGIHGLYRFYSVDIPGSELVAGNNTIFLTQTNDHGPFVGIMYDYIRLEGPLTS 1240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2771306 2783485 - Cp4.1LG02g03870.1 Cpe02g00484 464433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00484 1240 Gene3D - 1043 1235 - -
Cpe02g00484 1240 Gene3D - 466 644 - -
Cpe02g00484 1240 SUPERFAMILY Starch-binding domain-like 356 451 IPR013784 GO:0030246
Cpe02g00484 1240 CDD RGL4_M 359 458 IPR029413 -
Cpe02g00484 1240 Pfam Polysaccharide lyase family 4, domain II 383 454 IPR029413 -
Cpe02g00484 1240 Pfam Polysaccharide lyase family 4, domain II 959 1031 IPR029413 -
Cpe02g00484 1240 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 19 647 - -
Cpe02g00484 1240 SUPERFAMILY Starch-binding domain-like 959 1033 IPR013784 GO:0030246
Cpe02g00484 1240 SUPERFAMILY Galactose-binding domain-like 465 645 IPR008979 -
Cpe02g00484 1240 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 647 1239 - -
Cpe02g00484 1240 CDD RGL4_M 953 1035 IPR029413 -
Cpe02g00484 1240 SUPERFAMILY Galactose mutarotase-like 40 322 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cpe02g00484 1240 CDD RGL4_C 1047 1235 - -
Cpe02g00484 1240 CDD RGL4_C 470 647 - -
Cpe02g00484 1240 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 647 1239 - -
Cpe02g00484 1240 Gene3D - 35 333 IPR014718 GO:0030246
Cpe02g00484 1240 Gene3D - 645 908 IPR014718 GO:0030246
Cpe02g00484 1240 CDD RGL4_N 643 918 - -
Cpe02g00484 1240 Pfam Polysaccharide lyase family 4, domain III 1045 1234 IPR029411 -
Cpe02g00484 1240 Pfam Polysaccharide lyase family 4, domain III 468 647 IPR029411 -
Cpe02g00484 1240 SUPERFAMILY Galactose-binding domain-like 1042 1235 IPR008979 -
Cpe02g00484 1240 CDD RGL4_N 42 320 - -
Cpe02g00484 1240 Pfam Rhamnogalacturonate lyase family 34 228 IPR010325 -
Cpe02g00484 1240 Pfam Rhamnogalacturonate lyase family 646 827 IPR010325 -
Cpe02g00484 1240 Gene3D - 958 1032 - -
Cpe02g00484 1240 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 19 647 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00484 Cpe06g00459 CCT
Cpe02g00484 Cpe07g00181 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00780 Cpe-Chr1:4566550 Cpe02g00484 Cpe-Chr2:2771306 0 dispersed
Cpe02g00484 Cpe-Chr2:2771306 Cpe07g00181 Cpe-Chr7:1116332 0 dispersed
Cpe10g00780 Cpe-Chr10:4434707 Cpe02g00484 Cpe-Chr2:2771306 0 transposed
Cpe10g00529 Cpe-Chr10:3101888 Cpe02g00484 Cpe-Chr2:2771306 1.12E-51 wgd
Cpe02g00484 Cpe-Chr2:2771306 Cpe06g00459 Cpe-Chr6:2689080 2.37E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00484 K18195 - csv:101203947 1179.08