Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00486 AAGAATCGAGTTTCGGATCTAAGAATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGAAGGAGTGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTTTATGAATACTCCAGCACCAGCATGAAAACACTAATAGAACGATATCACAAGACAAAAGAGGAGCACCATCAGCTTGGGGTCTCGACTTCAGAAGTCAAGTACTGGCAAAGGGAAGCAGCAATGTTACGGCAACAACTGCAGAGCTTACAAGAAAATCATCGGCAGATGATGGGTGAAGAGCTGACTGGTCTGAGTGTCAAAGATCTACAGAATCTAGAAAACCAACTGGAGATAAGTCTCCGTGGTGTCCGTATGAAGAAGGATCAAATCTTAATGGATGAGATACAAGAACTAAACAGAAAGGGAAACCTAATTCACCAAGGCAATATGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAATCTGGAATTATACCAAAAGGTCTATGGAACAAAGGATGCCAAGGGGGCAAGCAGTCTTACAAATGGCCTGGGTGTGGGAGAGGATGCAGTTATACCTATCAGCCTTCAACTCAGCCAACCACAACAACAAAACCTTGAGGCACCAGAAAAAGCAACAAAACTGGGGTACAGTTGCGACAAAATGCATAAATGTTCAATAATGCGTACAAATGAACTTTTCCAAAGTCAGTATTCCAATCTTGTTCTTTTGATGGTTGCAGCAGACTACAACTACGCTAGCAAAAAGAGACCTTACACCAACCAGGAAGATCTCGCTTGGTGTTTCTTATTGTAG 888 43.24 KNRVSDLRMGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYHKTKEEHHQLGVSTSEVKYWQREAAMLRQQLQSLQENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQELNRKGNLIHQGNMELYKKVNLIRQENLELYQKVYGTKDAKGASSLTNGLGVGEDAVIPISLQLSQPQQQNLEAPEKATKLGYSCDKMHKCSIMRTNELFQSQYSNLVLLMVAADYNYASKKRPYTNQEDLAWCFLL 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2793523 2806151 + Cp4.1LG02g03920.1 Cpe02g00486 464435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00486 295 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 239 - -
Cpe02g00486 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cpe02g00486 295 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cpe02g00486 295 Pfam K-box region 91 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g00486 295 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Cpe02g00486 295 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Cpe02g00486 295 ProSiteProfiles K-box domain profile. 94 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g00486 295 Coils Coil 94 121 - -
Cpe02g00486 295 SUPERFAMILY SRF-like 10 97 IPR036879 GO:0003677|GO:0046983
Cpe02g00486 295 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cpe02g00486 295 Gene3D - 21 100 IPR036879 GO:0003677|GO:0046983
Cpe02g00486 295 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cpe02g00486 295 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cpe02g00486 295 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cpe02g00486 295 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 9 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00486 Cpe06g00463 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00370 Cpe-Chr1:2125778 Cpe02g00486 Cpe-Chr2:2793523 1.99E-91 dispersed
Cpe02g00486 Cpe-Chr2:2793523 Cpe06g00463 Cpe-Chr6:2711981 8.77E-80 dispersed
Cpe14g00235 Cpe-Chr14:1356557 Cpe02g00486 Cpe-Chr2:2793523 5.52E-29 dispersed
Cpe02g01566 Cpe-Chr2:13262616 Cpe02g00486 Cpe-Chr2:2793523 9.73E-43 transposed
Cpe10g01202 Cpe-Chr10:8964083 Cpe02g00486 Cpe-Chr2:2793523 6.84E-40 transposed
Cpe10g00528 Cpe-Chr10:3096610 Cpe02g00486 Cpe-Chr2:2793523 2.66E-78 wgd
Cpe02g00486 Cpe-Chr2:2793523 Cpe06g00461 Cpe-Chr6:2701913 2.14E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49007 PF01486 K-box 1.00E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00486 K09264 - csv:101203545 390.963