Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00490 AGAAAAAAAAAAATGGAGTTGAATGAACACTGTTTGTTAGATGAACTTCAAGCTTTGAGAAGAGAAATTAATTGGGAATTAGCAATGCCCACTGAAATTAACGAGCTAATCTCCACTGCTAATGGCTGGAATTTTGATTGCTCTGATTCTTTCCCCTTTTCTTTACCTATTGACCACCAGGATTTTGGCTATCTTCTCGGCGGCGAAGACGACTATTCTTTTTCCGGCGGCCAGTTCACGGCGGCTCCGAGTACCGGCGATTCGATGTCGTACACTACGTTCGAGACTACGCCGGGGGGTTTCGGTAGGTGTCCGGTTGTGGAAGAGGAGGATGAGATTCCGAATCTTGAAGTTCTGGGTAGTTGTAAAATGGAGCCGGCTTATTCCCCTGAAATTGCTCCGGTTTTCAACGCCGGTGGCACGTGCGATTTTGGCCAAAAGATCGTTGGTTCGGCGAGTAAGAAGCTTCAGGGGAAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGGCTTAATGATCGCCTCTCCATGCTCCGATCCATCGTCCCCAAAATCAGCAAGATGGATAGGACTGCGATTCTTGCGGATTCAATCGATTACGTGAAGGAATTGCTCGAGAAAATCAACCATTTGCAAAGGGAGATTGAAATGACGAATCCAAGTAAATCGGAGTCTATGGGGATTTTGAGAGCTGAGAAGCCGAGTGAATATTTGGTCAGAAATTCACCTAAGTTTAATGTGGAAAGGAGAGAAGGTGATACTCGGATTGAGATTTGCTGTGCGGCTAAGCCTGGCTTGTTGTTATCTACAGTGCACACTCTTGAAGCTTTAGGACTTGATATTCAGCAATGTGGAACGGAGCGGAGACCGGTTGAGGAAGTAAAACAAGCATTATTTGAAAATGCTGGATATGGAGGAAGATGTCTGTAG 939 46.33 RKKKMELNEHCLLDELQALRREINWELAMPTEINELISTANGWNFDCSDSFPFSLPIDHQDFGYLLGGEDDYSFSGGQFTAAPSTGDSMSYTTFETTPGGFGRCPVVEEEDEIPNLEVLGSCKMEPAYSPEIAPVFNAGGTCDFGQKIVGSASKKLQGKPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADSIDYVKELLEKINHLQREIEMTNPSKSESMGILRAEKPSEYLVRNSPKFNVERREGDTRIEICCAAKPGLLLSTVHTLEALGLDIQQCGTERRPVEEVKQALFENAGYGGRCL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2842059 2843688 + Cp4.1LG02g03770.1 Cpe02g00490 464439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00490 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Cpe02g00490 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 225 IPR036638 GO:0046983
Cpe02g00490 312 SMART finulus 164 213 IPR011598 GO:0046983
Cpe02g00490 312 Coils Coil 197 217 - -
Cpe02g00490 312 Gene3D - 151 223 IPR036638 GO:0046983
Cpe02g00490 312 PANTHER - 295 312 - -
Cpe02g00490 312 PANTHER - 6 287 - -
Cpe02g00490 312 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Cpe02g00490 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 295 312 - -
Cpe02g00490 312 Coils Coil 2 22 - -
Cpe02g00490 312 CDD ACT_UUR-ACR-like 257 285 - -
Cpe02g00490 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 287 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00490 Cpe06g00467 CCT
Cpe02g00490 Cpe11g00494 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00490 Cpe-Chr2:2842059 Cpe11g00494 Cpe-Chr11:2865517 2.72E-84 dispersed
Cpe10g00525 Cpe-Chr10:3080435 Cpe02g00490 Cpe-Chr2:2842059 4.99E-67 wgd
Cpe02g00490 Cpe-Chr2:2842059 Cpe06g00467 Cpe-Chr6:2750571 2.27E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49008 PF00010 HLH 7.70E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00490 - - cmax:111480299 584.719