Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00496 GCTGTGTCACCGAGCTGCAACTTGCTTCACTGTCGGTCGGGTTCTTCTTTGTCTTCTTCTTCTTCTTCTACCATTTCCGACCAAACAAGAGACGACTTTCCCGACATGTCGTCTCTACATTTCCTCTGTTTTCTCTCTCTCTTGAGCTTCCTCACCGGAATCAAGTCCGACGAGCGTCAAATCCTAACCAAACTCCAAACCAATCTCCAAAGCTCGAACACCAAGGTGTTCGAAAATTGGGGACACGAAACCCACATCTGCAACTTCACCGGAATCACCTGTAATTCCGACGAGTTCGTCACCGGAATTGACCTCTCCAAAAGGGGTTTATCAGGGGTTCTTCCATTTGATGCCATTTGTGAACTGAAATCATTGGAGAAGCTAGCTTTTGGGTCGAATTCCTTGCACGGCGGAGCAACGGAGAGCTTGAACAAGTGTGTCAAATTGAAATATTTGGATCTGGGTATCAATTCCTTCTCTGGGTCCTTCCCCGACATACATTCTTTGACGGAATTGCAGTATCTGTACTTGAATTTAAGTGGGTTTTCCGGGAAGTTTCCATGGAAATCCGTCGAGAATTTTACTGGGTTGATCGAGTTAAGCCTTGGCGATAACGCTTTCGACAACGCTACGTTTCCGGTGGAGGTCACAGCTTTGAAGAAGCTCACATGGCTTTACTTTGGGGATTTGTCGGAGGTGAGGTTTTTGACGAATTTGGTTTCTCTGCAACTGTTTGATAATGAAATCTCCGGCGGTGTTCCGGCGGAGCTTGGTGAGTTCAAGTCGCTGGTGGATCTTTCGCTTTATAGTAATCGGCTTACTGGTCCGCTGCCGCAATCGATTGGTTCGATCACTTCTGATATTGGGAAGGCGGTGGCTCTCTCGGAATTACGCGTCGAAAATAATCGATTATCAGGTCGTTTGCCGTTGGAGATTTCGCAAGCGAAATCTCTTGCTAAAGTTAGTTTGAGCAATAATGAGTTTTTCGGTGAACTTCCGGTAACTATTGGTGACTTGAAGCATCTCGACAGCCTCGAATTGCAGAGCAATAGATTCTCTGGTTTGATTCCGGAGACGATTGGCTCGTGTGATTCCCTGTCTATCGTCAATTTCGCGGAAAATTTGTTCTCGGGAAAAATCCCTTCGTCTCTAGGGTTTGTTGCTGTTCTAAATTCTCTGAATCTCTCCAATAACGCCCTCTCTGGTGAAATCCCCTCGACGTTTTCGCATTTGAAGTTGAGTTTTCTCGATCTTTCCAATAATCAGTTAACCGGTCCGGTGCCAGAATTGCTTGCGAATGGAGCTTACAAAGAAAGCTTCGCTGGAAACCCTGGCCTCTGTAGTGATGTTGATGGCGTTTTACAGCGATGTTCACAGAGATCCGACGATTCCAAGCATGTTCGTACATTTGTTATCTGTTTCGCCGTCGGATTACTTCTTCTCAGCATAACAGTATGGTGCTTCATAACGTTGAAAAAGAGTGAAAAAGACAGAGATTGGTCGCTTAAAGAGGAATCATGGGACCTAAAATCCTTCCACGTAATGTCATTCACAGAGGACGAGATTCTCAATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTATAAAGTGACGGTCGGAAATGGGAAAGATGAAGCATATATGGAACACCAATCCATACGACGACAAAAGGAGGAACCGAAGCTCGTCGCCGATTCTCCAAAAACAAAGAACGAAATCCTCAGAATTCGATTCAGAGAATACGGGTATACCTACAAAGTCGACGAGAAGAGCGACGTGTACAGTTTCGGGGTCGTGTTGTTGGAGTTGGTGAGCGGGAAGAAGGCGATCGAGGCGGAGTTCGGGGAGAACAAGGACATAGTGGAATGGGTATCAAACAATTTGAAGACAAGAGAAAGGGTATTGAGCTTGGTTGACTCAAGGCTAGGAGACATGTTTAAAGAGGACGCCATAAAGGTCCTGAGAATTGGGATTTTGTGCACAGCCAGGGCTCCGACATCGAGACCGACAATGAGAAGCGTGGTCCAAATGCTACAAGAAGCCCAACCTTGTGGAGAGAGAGATATGGTCGGTCTGTTGTTGTTGTTCTTATTTCTTGTCTTTTTGATTTCTCCGGCGGTCGAGAATGATCAGTCGGGGTTTTTCTCTCTGATGAAACAGACGGTGGTTGGGAATTCTCTGCCGTCTGATTGGGATGGGAAATCGTTCTGTAACTTCACCGGCGTGAGCTGTAATGAAATGGGGTTTGTGGTGGGGATTGATCTTTCAGGTCGGGTGGTTTCCGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTGCCGGAATTGAGAGTGCTCCGTCTTGGCCGGAGTGGGTTTCGTGGGACTTTTCCACATGGGATAATGAATTGCTCTCGGCTGAATTCCATCTGGGCAATCGGAATATCGGCGTTTATAATCTTCATCGGCGCTGCTCTGTATCTACGACGGCGATTCACCAGAGAAAAATCAGTAATGGAACAGGACGAAACACTGTCATCATCGTTTTTCTCGTACGACTATGCGTATTCGTCAAAAACGACAACGAAATGCGACGTGTATAGCTTTGGGATTGTGTTAATGGAGCTGATAACGGGGAAGAAGCCGGTGGAGGCGGAGTTTGGAGAGAATAAGAATATTATATACTGGGTGTCGAATAAAGTAGACACGAAAGAAGGAGCTATGGAAGTTTTGGATAAGAGAGTTTCTGCGTCGTTTAAAGATGAAATGATTCAAGTTCTGAGGATTGCAATTCGTTGCACGTATAAGAATCCAGCTCTTCGACCTACCATGAAGGAAGTGGCTCAGTTGTTGATTGAGGCTGACCCTTGTAAATTCGATTCTCAAAATAACAAATGCTCGAAACACGCCACCGCCAAAATCAAGAACAACCCATTTGAGCTATGA 2940 45.78 AVSPSCNLLHCRSGSSLSSSSSSTISDQTRDDFPDMSSLHFLCFLSLLSFLTGIKSDERQILTKLQTNLQSSNTKVFENWGHETHICNFTGITCNSDEFVTGIDLSKRGLSGVLPFDAICELKSLEKLAFGSNSLHGGATESLNKCVKLKYLDLGINSFSGSFPDIHSLTELQYLYLNLSGFSGKFPWKSVENFTGLIELSLGDNAFDNATFPVEVTALKKLTWLYFGDLSEVRFLTNLVSLQLFDNEISGGVPAELGEFKSLVDLSLYSNRLTGPLPQSIGSITSDIGKAVALSELRVENNRLSGRLPLEISQAKSLAKVSLSNNEFFGELPVTIGDLKHLDSLELQSNRFSGLIPETIGSCDSLSIVNFAENLFSGKIPSSLGFVAVLNSLNLSNNALSGEIPSTFSHLKLSFLDLSNNQLTGPVPELLANGAYKESFAGNPGLCSDVDGVLQRCSQRSDDSKHVRTFVICFAVGLLLLSITVWCFITLKKSEKDRDWSLKEESWDLKSFHVMSFTEDEILNSIKDENLIGKGGSGNVYKVTVGNGKDEAYMEHQSIRRQKEEPKLVADSPKTKNEILRIRFREYGYTYKVDEKSDVYSFGVVLLELVSGKKAIEAEFGENKDIVEWVSNNLKTRERVLSLVDSRLGDMFKEDAIKVLRIGILCTARAPTSRPTMRSVVQMLQEAQPCGERDMVGLLLLFLFLVFLISPAVENDQSGFFSLMKQTVVGNSLPSDWDGKSFCNFTGVSCNEMGFVVGIDLSGRVVSGRFPADVCSYLPELRVLRLGRSGFRGTFPHGIMNCSRLNSIWAIGISAFIIFIGAALYLRRRFTREKSVMEQDETLSSSFFSYDYAYSSKTTTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSASFKDEMIQVLRIAIRCTYKNPALRPTMKEVAQLLIEADPCKFDSQNNKCSKHATAKIKNNPFEL 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2888980 2899090 + Cp4.1LG02g03830.1 Cpe02g00496 464445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00496 979 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 39 228 - -
Cpe02g00496 979 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 282 553 - -
Cpe02g00496 979 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 701 808 - -
Cpe02g00496 979 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 848 962 - -
Cpe02g00496 979 Gene3D Transferase(Phosphotransferase) domain 1 560 694 - -
Cpe02g00496 979 Gene3D Transferase(Phosphotransferase) domain 1 811 974 - -
Cpe02g00496 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 586 694 - -
Cpe02g00496 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 282 553 - -
Cpe02g00496 979 Pfam Leucine rich repeat N-terminal domain 56 95 IPR013210 -
Cpe02g00496 979 Pfam Leucine rich repeat N-terminal domain 731 751 IPR013210 -
Cpe02g00496 979 SUPERFAMILY L domain-like 96 447 - -
Cpe02g00496 979 SUPERFAMILY L domain-like 722 809 - -
Cpe02g00496 979 Gene3D Ribonuclease Inhibitor 717 810 IPR032675 -
Cpe02g00496 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 848 962 - -
Cpe02g00496 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 228 285 - -
Cpe02g00496 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 701 808 - -
Cpe02g00496 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 39 228 - -
Cpe02g00496 979 Gene3D Ribonuclease Inhibitor 326 457 IPR032675 -
Cpe02g00496 979 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 228 285 - -
Cpe02g00496 979 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 586 694 - -
Cpe02g00496 979 SUPERFAMILY Protein kinase-like (PK-like) 847 950 IPR011009 -
Cpe02g00496 979 Gene3D Ribonuclease Inhibitor 54 231 IPR032675 -
Cpe02g00496 979 Gene3D Ribonuclease Inhibitor 232 325 IPR032675 -
Cpe02g00496 979 Pfam Protein tyrosine and serine/threonine kinase 831 948 IPR001245 GO:0004672|GO:0006468
Cpe02g00496 979 SUPERFAMILY Protein kinase-like (PK-like) 586 689 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00496 - - - csv:101223100 450.669
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00496 Cpe07g00194 CCT
Cpe02g00496 Cpe06g00472 CCT
Cpe02g00496 Cpe11g00500 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00496 Cpe-Chr2:2888980 Cpe15g00410 Cpe-Chr15:5252990 8.02E-28 dispersed
Cpe02g00496 Cpe-Chr2:2888980 Cpe06g00472 Cpe-Chr6:2787761 8.13E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g576 Blo01g01785 . . Bda03g00445 . Bpe04g00409 . Bma01g02569 Cmo05g00597 Cmo12g00184 Cma01g01455 Cma09g00611 . Car12g00210 . Cpe06g00472 Cpe07g00194 Bhi04g00891 . . . . . Lcy13g1799 . . . . . . . Cone4ag1266 Cone7ag0878 Cone17ag1151 Cone20ag0577 Lsi04g02309 Csa03g04527 Chy04g00175 Cme03g01772 . . . Bda13g01341 . Bpe14g00504 . Bma02g00096 . Cmo01g01507 Cmo09g00599 Cma12g00230 Cma05g00571 Car05g00517 Car09g00542 Cpe11g00500 Cpe02g00496 Bhi09g02546 . . . . . . . . . . . . . . Csa02g02237 Chy03g01278 Cme04g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025722 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62209 PF07714 PK_Tyr_Ser-Thr 5.50E-08 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00496 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0