Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00508 CCCATAAGATTCTTCTTCTTCTTCTTCGTCTTGTTTCTGTTGAATCGGCATTCAACTGCTCTGCAACTCCACCGCCATGAAACCCACCTTCTTTTCTCCTTCAAAGCTTCCATTTACACAGACCCATCTCGCCTTCTCTCCAATTGGGATCTCTCCGTTTCCGTCTGCCACTGGAACGGCATCACATGCACCGGAGACAATGCTACCGTCGTTTCTGTCGACCTCGCCGGTAAGAATCTCACCGGCGTAATTCCCGACTCTGTTTTCCGCCTACCCCACATCCAGTCTCTGGACCTCTCTGACAACCAATTCGTCGGAGAACTCCCTCGGAATATCTTTACTGTCGCCTCTTCTTCCCTTCTCCATTTGAATTTGAGCAACAATAACATCACCGGCAAACTCCCTTTTGGCGGCGTTCATGGTCTTCAAATGTTGGACTTATCCAACAACATGATTTCCGGTTCAATTCCGACAGATATCGGATTGTTCTTTGATCTTCAGTTTCTTGATCTCGGAGGGAATGCTTTAATAACGGAAATTCCGAATTCCCTTGCGAATCTCTCTTCGTTGGAGTTTTTGACATTGGCGTCTAATAAACTCACCGGAGAAATTCCGAGGGATTTGGCCGGATTGAAGCGGCTGAAATGGGTTTATTTGGGTTTCAATGAATTTTCCGGCGAGATTCCTGAAGAACTCGGCCAATTGGGTTCTTTAAATCATCTTGATCTTGTTTACAACAAGCTAACGGGGAGGATTCCGGCGGCGTTTGGGAATCTCTCTCAGCTTGAGTATCTATTTCTCTACCAAAATTGTCTCTCCGGTTCGATTCCTCCTTCGATTTTTAGTTTGGTGAATTTGATATCTCTCGATGTTAGCGATAATTCTCTGTCGGGGGAGATTCCGGAGCTCGTAATTCAATTAAAGAATTTGGAGATTTTGCATCTGTTTCGAAACAATTTCACCGGAAAAATTCCGACAGCTTTGGCTGCTCTGTCTCGGTTGCAGATTCTTCAGTTATGGTCCAATGGATTTTCCGGCGAGATTCCGGCGTTACTTGGAACACAGAACAATCTCACTGTTCTTGATGTTTCAACTAATTATCTTACCGGAAAAATCCCACATGGGCTTTGTGATTCTAAACGCTTATTTAAGCTTATCCTGTTTTCAAATTCGCTAAACGGCGAAATTCCAGAGAGTCTCTGTTTTTGCAGGAGTTTACGGCGTGTTCGGCTTCAAAACAACCGTCTCTCCGGCGAATTGTGTCCGGGATTTACGAAATTGCCTCTACTTTACTTTTTGGATATCTCTGGCAACCGATTTTCCGGCAGGATCGACGGCGAGAAATGGGAGTTGCCGGCTCTTCAGATGATGACCCGAGCTGCATCGCTCATTCAGATAAATATCTCTCACAATCACTTCCACGGAAGATTGCCGTCCACCGGAGCTTTTTTAGCCATAAACAGCACCGCCGTCGCCGGGAACAACCTCTGTGGCGGCGACATTAGCAGCAATCTACCCACTTGCGAAAATGGCGTTAAAAAAAGACGCTACAGCCGGTTGTGGTGGATTACGGTCATATTGGCGGCGATAGTGGTGGCGACGGCGGTTTTTGTCAGAATACGCCGTCGTAAGCAGCGGATGGGAGAGAAAAGAGTGCAAAACGAGGAGGGAATTTGGGAGCTGAAATTGTTCGATCCCAAAGCGTCCAAATTCGTCACGGTGGACGCCATTCTGCAATCCGCCGGGAAAGCAAACGAAACGGAGATTCAATTCGTGGTGGAGAAAATTAACGGGAATATATCGGCCGGAATTGGGGAGGCGGCGGAATTGGGGAGGCTTAGACATTCTAATATCGTGCGGCTGTTGGCGGCGTGTCGGTCGGACAAAACAGGGTATTTGGTACGAGAATATGTGCAGGGGCGGCGCTTGAGCCAAATTGTTGGGAGTTTGAGCTGGGAACGACGTCGTAACATCGCCCTGGGAATTGCCCGGGGGCTGCAATTCTTGCACTCCCACTGTTCTCCCGGTGTAATTGCGGCGAATTTTTCGCCGGAGAAGATCATTGTCGATGAAAAATATGAACCCCGGCTGGTTGTCGGATTGTCCAGCGCCGCCGTTTCTCCGCACTACGCCGCCCCCGAGACAAAGGAAAGTGGAGACATAACGGAGAAAAGCAATGTGTACACTTTGGGGCTGGTTCTTATTCAATTACTGACCGGAAAGATGGCCGTCCACCGGCAAGAGGTGGTGGAATGGGCACGGTCCGATTGTCGTGCCGAGATGTGGGTTCTTGATGGTGCGGTTACCGGCGCCACCGAGCAGGACCAGATGGTGGGGTTTATGAACTTGGCTCTGGACTGTACCGCCGACGACCCCATGGCGAGGCCGTCCTCGGAGGTTGCCTACAAAACCATGCTCAATCTTTGTCGGACCGCTTGCTATTCTAAACTTTTGTTGACCTAA 2463 48.84 PIRFFFFFFVLFLLNRHSTALQLHRHETHLLFSFKASIYTDPSRLLSNWDLSVSVCHWNGITCTGDNATVVSVDLAGKNLTGVIPDSVFRLPHIQSLDLSDNQFVGELPRNIFTVASSSLLHLNLSNNNITGKLPFGGVHGLQMLDLSNNMISGSIPTDIGLFFDLQFLDLGGNALITEIPNSLANLSSLEFLTLASNKLTGEIPRDLAGLKRLKWVYLGFNEFSGEIPEELGQLGSLNHLDLVYNKLTGRIPAAFGNLSQLEYLFLYQNCLSGSIPPSIFSLVNLISLDVSDNSLSGEIPELVIQLKNLEILHLFRNNFTGKIPTALAALSRLQILQLWSNGFSGEIPALLGTQNNLTVLDVSTNYLTGKIPHGLCDSKRLFKLILFSNSLNGEIPESLCFCRSLRRVRLQNNRLSGELCPGFTKLPLLYFLDISGNRFSGRIDGEKWELPALQMMTRAASLIQINISHNHFHGRLPSTGAFLAINSTAVAGNNLCGGDISSNLPTCENGVKKRRYSRLWWITVILAAIVVATAVFVRIRRRKQRMGEKRVQNEEGIWELKLFDPKASKFVTVDAILQSAGKANETEIQFVVEKINGNISAGIGEAAELGRLRHSNIVRLLAACRSDKTGYLVREYVQGRRLSQIVGSLSWERRRNIALGIARGLQFLHSHCSPGVIAANFSPEKIIVDEKYEPRLVVGLSSAAVSPHYAAPETKESGDITEKSNVYTLGLVLIQLLTGKMAVHRQEVVEWARSDCRAEMWVLDGAVTGATEQDQMVGFMNLALDCTADDPMARPSSEVAYKTMLNLCRTACYSKLLLT 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2984020 2987027 + Cp4.1LG02g03660.1 Cpe02g00508 464457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00508 820 Gene3D Ribonuclease Inhibitor 139 231 IPR032675 -
Cpe02g00508 820 SMART LRR_typ_2 91 115 IPR003591 -
Cpe02g00508 820 SMART LRR_typ_2 235 258 IPR003591 -
Cpe02g00508 820 SMART LRR_typ_2 187 211 IPR003591 -
Cpe02g00508 820 SMART LRR_typ_2 139 163 IPR003591 -
Cpe02g00508 820 SMART LRR_typ_2 307 331 IPR003591 -
Cpe02g00508 820 SMART LRR_typ_2 259 283 IPR003591 -
Cpe02g00508 820 Gene3D Transferase(Phosphotransferase) domain 1 603 810 - -
Cpe02g00508 820 SUPERFAMILY L domain-like 219 485 - -
Cpe02g00508 820 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 318 800 - -
Cpe02g00508 820 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 73 253 - -
Cpe02g00508 820 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 222 498 - -
Cpe02g00508 820 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 166 352 - -
Cpe02g00508 820 Pfam Leucine rich repeat 237 296 IPR001611 GO:0005515
Cpe02g00508 820 ProSiteProfiles Leucine-rich repeat profile. 141 163 IPR001611 GO:0005515
Cpe02g00508 820 Gene3D Ribonuclease Inhibitor 236 510 IPR032675 -
Cpe02g00508 820 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cpe02g00508 820 SUPERFAMILY Protein kinase-like (PK-like) 605 802 IPR011009 -
Cpe02g00508 820 Pfam Leucine Rich repeat 117 132 IPR001611 GO:0005515
Cpe02g00508 820 Pfam Protein kinase domain 604 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00508 820 ProSiteProfiles Protein kinase domain profile. 526 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00508 820 SUPERFAMILY L domain-like 25 301 - -
Cpe02g00508 820 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00508 - - - cpep:111786546 697.582
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00508 Cpe07g00209 CCT
Cpe02g00508 Cpe11g00096 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00508 Cpe-Chr2:2984020 Cpe06g00491 Cpe-Chr6:2908872 9.78E-09 dispersed
Cpe10g00515 Cpe-Chr10:3024430 Cpe02g00508 Cpe-Chr2:2984020 8.73E-53 wgd
Cpe02g00508 Cpe-Chr2:2984020 Cpe06g00486 Cpe-Chr6:2869084 8.90E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g4 Blo01g01484 . . . . . . Bma01g02238 . . Cma01g01777 Cma05g00116 . Car12g00229 . Cpe07g00209 . . . . . . . . . . . . . . . Cone20ag1268 Cone17ag0142 Cone16ag0715 Cone2ag0316 . . . . . . . . . . Bma01g00959 . . . . . Cma12g00246 Car01g01370 Car05g00100 Cpe11g00096 Cpe02g00508 . . . . . . . . . . . . . . . Csa02g02262 . .
Vvi4g276 . . . . . . . . . . Cma01g01604 . . . . . . . . . . . . . . . . . . . . . Cone7ag1439 . . . Csa03g04544 Chy04g00158 Cme03g01761 . . . . . . . . . Cmo01g01494 Cmo09g00612 . . Car01g01224 . . Cpe02g00508 . . . . . . . . . . . . . . Lsi08g01069 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006305 1 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 3 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62211 PF00069 Pkinase 1.60E-18 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00508 Cpe_Chr02 FPKM 1.075774 1.014388 0.232142 0.264546 4.49121 4.873561 5.329591 0.0 0.0 0.0